Table 2.
Frequency and distribution of Mycobacterium tuberculosis sub-lineages in 21 Ecuadorian isolates characterized by web-tools
| L4 Sub-lineages | Genotype | Web-tools | |||||||
|---|---|---|---|---|---|---|---|---|---|
| PhyReSse | TB-profiler | Mykrobe | PhyTB | GenTB | TB-LINEAGE | SNP-IT | CASTB | ||
| X-type/X3 | 4.1.1 | 2 | 2 | 2 | 2 | 2 | 2 | 2 | 2 |
| Haarlem/H3 | 4.1.2 | 4 | 2 | 2 | 2 | 2 | 4 | 4 | 4 |
| 4.1.2.1 | 0 | 2 | 2 | 2 | 2 | 0 | 0 | 0 | |
| LAM | 4.3.2 | 3 | 3 | 3 | 3 | 3 | 13 | 13 | 13 |
| 4.3.3 | 8 | 8 | 8 | 8 | 8 | 0 | 0 | 0 | |
| 4.3.4 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | |
| 4.3.4.1 | 0 | 1 | 1 | 1 | 1 | 0 | 0 | 0 | |
| 4.3.4.2 | 0 | 1 | 1 | 1 | 1 | 0 | 0 | 0 | |
| S-type/H1 | 4.4.1 | 1 | 0 | 0 | 0 | 0 | 1 | 1 | 1 |
| 4.4.1.1 | 0 | 1 | 1 | 1 | 1 | 0 | 0 | 0 | |
| Mainly T | 4,8 | 1 | 1 | 0 | 1 | 1 | 0 | 0 | 0 |
| 4,10 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | |
| Lineage 4 | ND | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| T1;T2;T3;T4 | ND | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 1 |
Abbreviations L4 Lineage 4, ND Not defined