TABLE 2.
Software tools for predicting MGF110-7L protein structure and functions
| Service | Website | Function (reference) |
|---|---|---|
| ClustalX 2.1 | http://www.ebi.ac.uk/tools/clustalw2 | Multiple sequence alignment program (55) |
| ESPript 3.0 | http://espript.ibcp.fr/ESPript/cgi-bin/ESPript.cgi | Generate a pretty PostScript output from aligned sequences (56) |
| NetSurfP 2.0 | https://services.healthtech.dtu.dk/service.php?NetSurfP-2.0 | Predict secondary structure for each residue of the input sequences (57) |
| ProtScale | https://web.expasy.org/protscale/ | Predict hydrophobicity or hydrophilicity scales on a selected protein |
| SignalP 5.0 | https://services.healthtech.dtu.dk/service.php?SignalP-5.0 | Predict the presence of signal peptides and the location of their cleavage sites in proteins (58) |
| NetNGlyc | https://services.healthtech.dtu.dk/service.php?NetNGlyc-1.0 | Predict N-glycosylation sites in proteins (59) |
| TMHMM-2.0 | https://services.healthtech.dtu.dk/service.php?TMHMM-2.0 | Predict the topological structure of transmembrane proteins (60) |
| I-TASSER | https://zhanggroup.org/I-TASSER/ | Protein structure prediction and structure-based function annotation (61) |