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. 2022 Nov 9;10(6):e02189-22. doi: 10.1128/spectrum.02189-22

TABLE 2.

Comparison of spa repeats for spa types often misassembled by SPAdes careful

Method spa type spa repeats
Sanger t034 08-16-02-25-02-25-34-24-25
SPAdes careful t011 08-16-02-25-34-24-25
Sanger t034 08-16-02-25-02-25-34-24-25
SPAdes careful t4677 08-16-02-25-02-24-25
Sanger t034 08-16-02-25-02-25-34-24–25
SPAdes careful t1170 08-16-02-25-02-25-25
Sanger t032 26-23-23-13-23-31-29-17-31-29-17-25-17-25-16-28
SPAdes careful t379 26-23-23-13-23-31-29-17-25-17-25-16-28
Sanger t15676 26-23-13-23-31-29-17-25-17-25-25-17-25–28
SPAdes careful t1358 26-23-13-23-31-29-17-25-17-25–28