TABLE 2.

Transcriptome analysis of ECF σ factor genes in wild-type KJ and ompA mutant, KJΔOmpA_299-356

Locus	Protein	TPMa of		Fold changeb
		KJ	KJΔOmpA299-356
Smlt0855	ECF σ factor	14.17	19.88	+1.40
Smlt1269	ECF σ factor	9.79	12.56	+1.28
Smlt1349	FecI-like σ factor	85.82	124.59	+1.45
Smlt1750	FecI-like σ factor	4.81	8.64	+1.80
Smlt2004	ECF σ factor	79.35	57.35	−1.38
Smlt2377	ECF σ factor	63.83	23.17	−2.75
Smlt2513	ECF σ factor	1.44	1.08	−1.34
Smlt2664	FecI-like σ factor	8.25	3.21	−2.57
Smlt2716	FecI-like σ factor	17.87	14.17	−1.26
Smlt2848	FecI-like σ factor	0	0	ND
Smlt2935	ECF σ factor	0.99	0	ND
Smlt3223	ECF σ factor	2.47	2.23	−1.11
Smlt3514	σP	49.65	156.39	+3.15
Smlt3555	σE	434.09	2,424.29	+5.58
Smlt3900	ECF σ factor	11.04	11.05	1.00
Smlt4579	ECF σ factor	0	0	ND

^aTPM, transcripts per kilobase million.

^bNegative fold changes represent genes that were significantly downregulated in KJΔOmpA_299-356, whereas positive fold changes represent upregulation in KJΔOmpA_299-356. ND, not determined.