TABLE 1.
Fifty-eight genes present in the cold-tolerant cluster and absent in the cold-sensitive cluster
| Function(s) and locus tag | Gene | Description of the gene producta |
|---|---|---|
| Inorganic ion transport and metabolism | ||
| cj0444 | Pseudogene | TonB-dependent receptor |
| cj0676 | kdpA | Potassium-transporting ATPase subunit KdpA |
| cj0755 | cfrA | Ferric enterobactin receptor CfrA |
| cj1040c | MFS transporter | |
| cj1415c | cysC | Adenylyl-sulfate kinase |
| Amino acid transport and metabolism | ||
| cj0029 | ansA | Type II asparaginase |
| cj0481 | dapA | Dihydrodipicolinate synthase family protein |
| cj0763c | hisS | Histidine-tRNA ligase |
| cj0817 | glnH | Transporter substrate-binding domain-containing protein |
| cj1726c | metA | Homoserine O-succinyltransferase |
| cj1727c | metB | O-Acetylhomoserine aminocarboxypropyltransferase/cysteine synthase |
| Defense mechanisms | ||
| cj0139 | Hypothetical protein | |
| cj0690c | SAM-dependent DNA methyltransferase | |
| cj1549c | hsdR | Type I restriction endonuclease subunit R |
| cj1551c | hsdS | Restriction endonuclease subunit S |
| cj1553c | hsdM | SAM-dependent DNA methyltransferase |
| Transcription | ||
| cj0480c | IclR family transcriptional regulator | |
| cj0757 | hrcA | HrcA family transcriptional regulator |
| cj1552c | mloB | Transcriptional regulator |
| cj1556 | Helix-turn-helix transcriptional regulator | |
| Carbohydrate transport and metabolism | ||
| cj0482 | uxaA′ | UxaA family hydrolase |
| cj0483 | uxaA′ | UxaA family hydrolase |
| cj0484 | MFS transporter | |
| Secondary metabolite biosynthesis, transport, and catabolism | ||
| cj0170 | Methyltransferase domain-containing protein | |
| cj1325 | Methyltransferase domain-containing protein | |
| cj1420c | Class I SAM-dependent methyltransferase | |
| Energy production and conversion | ||
| cj0490 | ald′ | Aldehyde dehydrogenase |
| cj1585c | FAD-binding oxidoreductase | |
| Nucleotide transport and metabolism | ||
| cj0766 | Pseudogene | Putative arylsulfate sulfotransferase |
| cj0381c | pyrF | Orotidine-5′-phosphate decarboxylase |
| General function prediction only | ||
| cj0054c | TIGR00730 family Rossman fold protein | |
| cj1555c | NAD(P)-dependent oxidoreductase | |
| Lipid transport and metabolism | ||
| cj0485 | SDR family oxidoreductase | |
| Posttranslational modification, protein turnover, and chaperones | ||
| cj1725 | NAD(P)/FAD-dependent oxidoreductase | |
| Intracellular trafficking, secretion, and vesicular transport | ||
| cj0969 | Pseudogene | Hemagglutination domain protein |
| Unknown function | ||
| cj0055c | Hypothetical protein | |
| cj0056c | Hypothetical protein | |
| cj0247c | Chemotaxis protein | |
| cj0380c | Hypothetical protein | |
| cj0425 | Hypothetical protein | |
| cj0565 | Hypothetical protein | |
| cj0566 | Hypothetical protein | |
| cj0568 | Hypothetical protein | |
| cj0569 | Hypothetical protein | |
| cj0617 | DUF2920 family protein | |
| cj0685c | cipA | DUF2972 domain-containing protein |
| cj0740 | Hypothetical protein | |
| cj0818 | Hypothetical protein | |
| cj0859c | Hypothetical protein | |
| cj0866 | Pseudogene | Arylsulfate sulfotransferase |
| cj0970 | Hypothetical protein | |
| cj0972 | Hypothetical protein | |
| cj0978c | Putative lipoprotein | |
| cj1122c | Hypothetical protein | |
| cj1456c | Hypothetical protein | |
| cj1550c | rloH | AAA family ATPase |
| cj1558 | Permease | |
| cj1714 | Small hydrophobic protein |
a
MFS, major facilitator superfamily; SAM, S-adenosylmethionine; FAD, flavin adenine dinucleotide; SDR, short-chain dehydrogenases/reductases.