TABLE 2.
List of 34 core bacterial genera and 39 core species in this study
| Core genus | Avg percentage (%) | 95% confidence interval (%) | Core species |
|---|---|---|---|
| Alistipes | 4.48 | 3.85~5.11 | Alistipes finegoldii |
| Alistipes shahii | |||
| Anaerostipes | 0.62 | 0.49~0.74 | Anaerostipes hadrus |
| Bacillus | 0.04 | 0.039~0.049 | |
| Bacteroides | 46.53 | 43.66~49.39 | Bacteroides caccae |
| Bacteroides caecimuris | |||
| Bacteroides cellulosilyticus | |||
| Bacteroides dorei | |||
| Bacteroides fragilis | |||
| Bacteroides helcogenes | |||
| Bacteroides heparinolyticus | |||
| Bacteroides ovatus | |||
| Bacteroides salanitronis | |||
| Bacteroides thetaiotaomicron | |||
| Bacteroides vulgatus | |||
| Barnesiella | 0.27 | 0.24~0.30 | Barnesiella viscericola |
| Bifidobacterium | 1.26 | 0.77~1.75 | |
| Blautia | 0.29 | 0.25~0.33 | Blautia hansenii |
| Blautia sp. strain N6H1-15 | |||
| Butyrivibrio | 0.06 | 0.056~0.069 | |
| Campylobacter | 0.13 | 0.07~0.18 | Campylobacter jejuni |
| Clostridioides | 0.58 | 0.51~0.64 | Clostridiales bacterium CCNA10 |
| Clostridium | 0.58 | 0.41~0.75 | Clostridioides difficile |
| Clostridium bolteae | |||
| Clostridium sporogenes | |||
| Desulfovibrio | 0.45 | 0.29~0.61 | |
| Enterobacter | 0.81 | 0.24~1.38 | |
| Enterococcus | 0.06 | 0.051~0.078 | |
| Escherichia | 2.06 | 1.20~2.92 | |
| Eubacterium | 2.49 | 1.55~3.43 | Eubacterium hallii |
| Eubacterium rectale | |||
| Eubacterium eligens | |||
| Faecalibacterium | 11.70 | 10.3~13.1 | Faecalibacterium prausnitzii |
| Faecalitalea | 0.11 | 0.09~0.12 | Faecalitalea cylindroides |
| Flavonifractor | 0.37 | 0.29~0.45 | |
| Intestinimonas | 0.32 | 0.26~0.37 | Intestinimonas butyriciproducens |
| Lachnoclostridium | 0.50 | 0.39~0.60 | Lachnospiraceae bacterium Choco86 |
| Lachnospiraceae bacterium GAM79 | |||
| Lachnoclostridium phocaeense | |||
| Lactobacillus | 0.11 | 0.07~0.16 | |
| Mordavella | 0.13 | 0.10~0.15 | Mordavella sp. strain Marseille-P3756 |
| Muribaculum | 0.09 | 0.08~0.10 | |
| Odoribacter | 2.20 | 1.90~2.50 | Odoribacter splanchnicus |
| Oscillibacter | 0.94 | 0.80~1.08 | Oscillibacter sp. strain PEA192 |
| Paenibacillus | 0.06 | 0.054~0.064 | |
| Parabacteroides | 2.77 | 2.46~3.07 | Parabacteroides distasonis |
| Parabacteroides sp. strain CT06 | |||
| Prevotella | 6.47 | 5.18~7.76 | |
| Pseudomonas | 0.10 | 0.077~0.121 | |
| Roseburia | 1.35 | 1.11~1.60 | Ruminococcus bicirculans |
| Ruminococcus | 1.90 | 1.33~2.47 | |
| Streptococcus | 0.63 | 0.42~0.85 | Streptococcus mitis |
| Veillonella | 0.13 | 0.069~0.191 |