Table 3.
The primer sets (PS) used in this study
| Primer sets ID | Primer sequences (5′−3′) | Amplicon size (bp) | Tm (°C) | Target region |
|---|---|---|---|---|
| HLBas/r | F: TCGAGCGTATGCAATACG | 100 | 60 | 16s rDNA (Li et al., 2006) (33) |
| R: GCGTTATCCCGTAGAAAAAGGTAG | ||||
| P: AGACGGGTAGTAACGCG | ||||
| PS1 | F: GGGCAGAAACAGCAACAGA | 583 | 60 | CP004005.1:1096498 to 1097081 in the nonprophage region (this study) |
| R: TGTCTCACGCTCTATGGAGGA | ||||
| PS2 | F: AACGCAAATCGCGTACTCTT | 681 | 60 | CP004005.1:661737 to 662418 in the nonprophage region (this study) |
| R: TTTTCTGGTTGGGATGTGTG | ||||
| PS3 | F: GAACAATGCACGCCCTAAAT | 683 | 60 | CP004005.1:464946 to 465629 in the nonprophage region (this study) |
| R: ATTTGCCACCAAAAGAGAGG | ||||
| PS4 | F: CAAGAGGCGTATACGGAAGC | 760 | 58 | CP004005.1:1174796 to 1175556 in the nonprophage region (this study) |
| R: GGGGCAAAGATGAAACTCAA | ||||
| PS5 | F: AAGCCGATAAAAATGCATGG | 798 | 60 | CP004005.1:1215079 to 1215858; CP004005.1:1254946 to 1255744 in two prophage regions (this study) |
| R: TGCAATGCGGTAGTTGATGT | ||||
| PS6 | F: CTTTGTCGTTCCGATCCAAT | 580 | 56 | CP004005.1:1220655 to 1221235; CP004005.1:1260522 to 1261102 in two prophage regions (this study) |
| R: AAGCGAAAAGGTATCGCAAA | ||||
| PS7 | F: TGACAGCACGCCTCAATTAC | 735 | 58 | CP004005.1:1211371 to 1212109; CP004005.1:1251241 to 125197 in two prophage regions (this study) |
| R: TAAAGCCGTTTCCAACTTCG |