TABLE 2.
Codon usage frequencies for phage P7_Pc and bacterial host P. carotovorum DSM 30168 for amino acids leucine, tyrosine, serine, aspartic acid, glutamic acid, asparagine, and phenylalanine
| Amino acid | Codona | Frequency of codon usage (‰) |
|
|---|---|---|---|
| Phage P7_pc | P. carotovorum 30168 | ||
| Leucine | TTG* | 13.41624 | 15.3344764 |
| TTA | 5.103519 | 10.8134623 | |
| CTG | 33.56288 | 57.215719 | |
| CTA | 3.075483 | 5.70949064 | |
| CTT | 12.92594 | 9.19049685 | |
| CTC | 10.34075 | 10.855674 | |
| Tyrosine | TAT | 15.3997 | 16.4174238 |
| TAC* | 22.68726 | 12.162052 | |
| Serine | AGT | 6.373827 | 7.62502656 |
| AGC | 9.092732 | 18.9275619 | |
| TCG | 4.657797 | 10.0303633 | |
| TCA | 6.886408 | 7.73710579 | |
| TCT | 13.72824 | 8.9088432 | |
| TCC* | 11.43277 | 9.88407805 | |
| Aspartic acid | GAT | 29.39538 | 34.0524356 |
| GAC* | 35.54634 | 18.9770514 | |
| Glutamic acid | GAG | 35.54634 | 18.8016547 |
| GAA* | 35.16748 | 36.6964865 | |
| Asparagine | AAT | 13.90653 | 17.5607775 |
| AAC* | 28.32564 | 20.2754238 | |
| Phenylalanine | TTT | 13.88425 | 19.819829 |
| TTC* | 27.36734 | 17.9989054 | |
a
Codons with an asterisk corresponds to the relevant anticodon used by the tRNAs present in the P7_Pc genome.