Table 2.
CpG | Annotated gene a | Other close gene a | Chr | Position a | p-value | Difference in DNAm b | SE c | Heterogeneity I2 (%), p-value d |
---|---|---|---|---|---|---|---|---|
| ||||||||
cg23032421 | IL5RA | - | 3 | 3152038 | 2.68×10−06 | 2.12×10−04 | 4.52×10−05 | 0.00, 0.68 |
cg24856537 | NOTCH4 | - | 6 | 32169929 | 3.72×10−06 | 1.41×10−04 | 3.05×10−05 | 19.52, 0.28 |
cg18583565 | - | MGMT | 10 | 131567980 | 8.55×10−06 | −1.70×10−04 | 3.79×10−05 | 0.00, 0.78 |
cg00702840 | - | MDH2 | 7 | 75703958 | 1.15×10−05 | −1.20×10−04 | 2.62×10−05 | 0.00, 0.78 |
cg04219552 | - | DYSF | 2 | 72126504 | 1.52×10−05 | 9.17×10−05 | 2.12×10−05 | 0.00, 0.66 |
cg05372549 | SRM | - | 1 | 11119861 | 2.45×10−05 | 2.29×10−05 | 5.42×10−06 | 0.00, 0.87 |
cg15560586 | CSNK1G1 | - | 15 | 64648483 | 2.73×10−05 | −3.10×10−05 | 7.39×10−06 | 0.00, 0.54 |
cg03451670 | AGAP1 | - | 2 | 236579469 | 3.14×10−05 | −2.50×10−04 | 5.91×10−05 | 0.00, 0.48 |
cg05065507 | TACSTD2 | - | 1 | 59042931 | 3.24×10−05 | −3.10×10−04 | 7.44×10−05 | 0.00, 0.76 |
cg06418871 | MARVELD2 | - | 5 | 68710831 | 3.26×10−05 | −2.60×10−04 | 6.28×10−05 | 0.00, 0.70 |
cg24329557 | GCM2 | - | 6 | 10882326 | 3.45×10−05 | 2.53×10−04 | 6.11×10−05 | 0.00, 0.43 |
cg27288968 | PAXBP1 | - | 21 | 34106765 | 3.76×10−05 | 1.37×10−04 | 3.32×10−05 | 0.00, 0.91 |
cg16303846 | DOCK10 | - | 2 | 225907539 | 5.10×10−05 | −5.70×10−05 | 1.41×10−05 | 0.00, 0.95 |
Note: The models adjusted for age, race/ethnicity (WHI_AS315 and WHI_BAA23 only), education, smoking status, pack-years, body mass index, case status (WHI_BAA23 only), and methylation-related technical covariates.
Abbreviations: DMPs, differentially methylated probes; CpG, cytosine-phosphate-guanine; DNAm, DNA methylation; Chr, chromosome; SE, standard error; I2, I-squared.
The University of California Santa Cruz UCSC database (GRCh37/hg19)
Difference in DNAm level (% 5mC) per 1% increase of maximum possible in optimism
Standard error in DNAm level (% 5mC) per 1% increase of maximum possible in optimism
I2 < 50% and p-value of heterogeneity > 0.05 were considered as homogenous across sub-studies