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. 2022 Dec 14;3(4):101809. doi: 10.1016/j.xpro.2022.101809

Table 2.

Summary of figures from the (Sayaman et al., 2021) manuscript that can be reproduced in CRI iAtlas, with a description of available expanded analysis

Figure in Sayaman et al. (2021) Expanded analysis
2A Selection of p-value threshold for inclusion of results.
Visualization of heritability of a given immune trait, immune trait category or immune trait module across different ancestry clusters.
2B Selection of p-value threshold for inclusion of results.
3A Selection of immune features of interest to include or exclude from the Manhattan plot.
Zoom to region, gene or SNP of interest.
Visualization of genomic regions in IGV tracks.
Link of SNP of interest to external databases (dbSNP, GTEx, GWAS Catalog, DICE, PheWeb).
4A, 4C, 4E, 4G Visualization of GWAS hits with -log10p(GWAS) > 6.
Zoom to region, gene or SNP of interest.
Visualization of genomic regions in IGV tracks.
Link of SNP of interest to external databases (dbSNP, GTEx, GWAS Catalog, DICE, PheWeb).
5A Selection of immune features of interest to include or exclude from the Manhattan plot.
Zoom to region, gene or SNP of interest.
Visualization of genomic regions in IGV tracks.
Link of SNP of interest to external databases (dbSNP, GTEx, GWAS Catalog, DICE, PheWeb).
5C Visualization of GWAS hits with -log10p(GWAS) > 6.
Zoom to region, gene or SNP of interest.
Visualization of genomic regions in IGV tracks.
Link of SNP of interest to external databases (dbSNP, GTEx, GWAS Catalog, DICE, PheWeb).
5D No expanded analysis available
6B Selection of functional pathway of interest.
Summary statistics available for download.