Table 1.
Differentially expressed genes selected for qRT-PCR expression analysis from Fragaria vesca leaves infected with Botrytis cinerea.
| Gene groups | Gene ID (F_vesca_v4.0) | Gene Name | Gene Annotation | log2FC | P adjusted |
|---|---|---|---|---|---|
| Signaling and transcription factors: | |||||
| FvH4_6g20130.1 | NHL10 | protein YLS9-like | 2.333 | 0.00013 | |
| FvH4_6g53770.1 | WRKY75 | probable WRKY transcription factor 75 | 4.957 | 4.4E-36 | |
| FvH4_6g20840.1 | CPK1 | transferring phosphorus-containing groups; calcium/calmodulin-dependent protein kinase | 3.292 | 7.8E-18 | |
| FvH4_4g26910.1 | Lr10 | probable receptor-like protein kinase At1g67000 | 1.231 | 0.0012 | |
| FvH4_4g07370.1 | SLP3 | subtilisin-like protease SBT2.5 | -2.602 | 5.6E-10 | |
| FvH4_4g35230.1 | ARR3 | two-component response regulator ARR5 | -2.919 | 1.5E-39 | |
| FvH4_2g17220.1 | PHOT2 | putative LOV domain-containing protein | -2.049 | 1.7E-16 | |
| FvH4_2g20290.1 | DSLPR | WD repeat-containing protein 70 | |||
| Pathogenesis related: | |||||
| FvH4_2g02920.1 | PR1 | pathogenesis-related protein 1-like | -1.374 | 0.0013 | |
| FvH4_3g05950.1 | PR4 | pathogenesis-related protein PR-4-like | 3.887 | 7.7E-15 | |
| FvH4_6g16950.1 | PR5.3 | thaumatin-like protein | 2.195 | 3.3E-05 | |
| FvH4_3g28390.1 | BG2-1 | glucan endo-1,3-beta-glucosidase-like | 3.092 | 6.3E-21 | |
| FvH4_4g19500.1 | BG2-3 | glucan endo-1,3-beta-glucosidase, basic vacuolar isoform | 4.885 | 5.9E-39 | |
| FvH4_6g22790.1 | PGIP1 | polygalacturonase-inhibiting protein | 1.728 | 7.2E-11 | |
| FvH4_4g05760.1 | PecLy1 | probable pectate lyase 8 | -4.456 | 1.9E-26 | |
| Secondary metabolite and hormone pathways: | |||||
| Salicylic acid | FvH4_7g19130.1 | PAL2 | phenylalanine ammonia-lyase | 2.539 | 4.5E-15 |
| Salicylic acid | FvH4_3g03130.1 | SCMT | salicylate carboxymethyltransferase-like | -2.784 | 3.2E-13 |
| Terpenoids | FvH4_6g11440.1 | GDS | (-)-germacrene D synthase-like | 6.279 | 3.1E-48 |
| Terpenoids | FvH4_6g36500.1 | BAS | beta-amyrin synthase | 3.485 | 8.2E-07 |
| Flavonoids | FvH4_6g16460.1 | 4CL7 | 4-coumarate–CoA ligase-like 7 | 6.767 | 3.4E-20 |
| Jasmonic acid | FvH4_5g32630.1 | 12OR2 | putative 12-oxophytodienoate reductase 11 | 2.773 | 1.9E-22 |
| Ethylene | FvH4_5g19290.1 | ACCox1 | 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like | 2.881 | 1.0E-32 |
| Gibberellin | FvH4_2g23440.1 | ECDS | ent-copalyl diphosphate synthase, chloroplastic-like | 6.814 | 9.4E-55 |
The genes are grouped after their annotated function according to the Fragaria vesca 4.0.a1 annotation. Log2-fold change values (Log2FC) and adjusted P-values are from the Botrytis cinerea infected RNA-seq dataset presented in this publication ( Supplementary Table 1 ).