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. 2022 Apr 12;71(5):1210–1224. doi: 10.1093/sysbio/syac027

Figure 5.


Figure 5.

a) Inline graphic values for caterpillar trees and random trees generated from the Yule and uniform models (1000 trees per data point). All internal nodes have null size and all leaves have equal size. Solid black curves are the means; dashed curves are the 5th and 95th percentiles; and gray curves are Inline graphic divided by the corresponding expectation of Inline graphic (where Inline graphic is the number of leaves). b) Inline graphic distributions for random trees on 64 leaves generated from the Yule and uniform models (1000 trees per model). c) Inline graphic values for 100 random trees on 16 leaves, before and after applying a 1Inline graphic sensitivity threshold. These random trees were generated from the alpha-gamma model with Inline graphic and Inline graphic. d) Inline graphic values for the same set of random trees. e) Absolute change in normalized index values due to applying a 1Inline graphic sensitivity threshold. Results are based on 100 random trees for each number of leaves, generated as in (c) and (d). Inline graphic here is the Colless-like index with Inline graphic and Inline graphic is the mean deviation from the median, as recommended by Mir et al. (2018). f) Values of Inline graphic versus Inline graphic for random multifurcating trees on 16 leaves, with node sizes drawn from a continuous uniform distribution. The dashed reference line has slope 1.