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. 2022 Dec 9;7(50):46156–46173. doi: 10.1021/acsomega.2c04283

Table 5. Parameters Calculated for Protein and Protein–Ligand Systems after 100 ns Simulation.

  MD simulation parameters
 
  average RMSD (nm) average RMSF (nm) average Rg (nm) average SASA (nm2) kinetic energy (kJ/mol) potential energy (kJ/mol) enthalpy (kJ/mol) volume (nm3) density (kg/m3)
tyrosine phosphatase 1b 0.351137 0.1494 1.89354 134.992 160029 –973265 –813198 637.851 1025.4
tyrosine phosphatase 1b- epicatechin complex 0.355333 0.1809 1.90585 139.833 112422 –601159 –488709 459.992 1008.44