Table 7.
Structure and activity details of withanolide F and similar compounds
| Name of the compounds | Structures | Binding energy | Key interactions | Assay details | Effective concentration | Reference |
|---|---|---|---|---|---|---|
| Withanolide F |
|
Wild-type: − 10.8 kcal/mol Alpha: − 8.6 kcal/mol Beta: − 10.1 kcal/mol Gamma: − 10.2 kcal/mol Delta: − 9.4 kcal/mol Omicron: − 9.6 kcal/mol |
Arg 403, Tyr 495, Gly 496, Phe 497, Gln 498, Thr 500, Asn 501, Gly 502, Tyr 505 | – | – |
Present study |
| Withanone |
|
− 9.4 kcal/mol | Arg 403, Glu 484, Asn 501 | In vitro binding assay showed that withanone inhibited the interaction between ACE2R and RBD, in a dose-dependent manner | IC50: 0.33 ng/mL | [62] |
| Peimine |
|
Wild-type: − 10.6 kcal/mol Alpha: − 11.2 kcal/mol Beta: − 11.0 kcal/mol Gamma: − 11.1 kcal/mol Delta: − 11.4 kcal/mol Omicron: − 10.2 kcal/mol |
Tyr 453, Ser 494, Gly 496 | Peimine inhibited variants of SARS‐CoV‐2 infection in furin‐overexpressing cells. Time‐resolved FRET assay showed that Peimine blocks the binding between SARS‐CoV‐2 Spike S1 and human ACE2 |
IC50: 0.4 μM against wild-type, alpha, and beta variants |
[64] |
| Artemisone |
|
− 8.1 kcal/mol | Phe 338, Phe 342, Phe 347, Val 367, Leu 368, Ser 371, Ser 373 |
ELISA-based test involving immobilized ACE2-His-tag protein showed that artemisone inhibited the binding of RBD to ACE2R in a dose-dependent manner Bio-layer interferometry experiments presented a KD value of 0.36 μM for the interaction of artemisone with the RBD and ACE2 in vitro |
IC50: 63.06 ± 9.63 μM | [65] |