Table 6.
Comparison of ABP-Finder with AMP-Scanner_v1 in the discrimination between Gram-staining classes within the test set. The values in bold denote the best performance for a given measure.
| Method | Gram+ | Gram− | Broad Spectrum | |||
|---|---|---|---|---|---|---|
| Pr | Sn | Pr | Sn | Pr | Sn | |
| AMPScanner vr.1 # | 0.08 | 0.42 | 0.13 | 0.33 | 0.88 | 0.23 |
| ABP-Finder (Training) | 0.44 | 0.41 | 0.90 | 0.24 | 0.87 | 0.96 |
| ABP-Finder (Training, AD) | 0.44 | 0.39 | 0.90 | 0.24 | 0.87 | 0.96 |
| ABP-Finder (Production) | 0.44 | 0.41 | 0.82 | 0.24 | 0.88 | 0.96 |
| ABP-Finder (Production, AD) | 0.44 | 0.39 | 0.82 | 0.24 | 0.88 | 0.96 |
# AMPScanner_v1 only considers peptides ≥ 10 AA for the predictions.