Table 3.
Total reads number, clean reads number, Q20 value, Q30 value, total mapped reads, and unique mapped reads based on the RNA-Seq data in libraries of HXK and BXK. _1, _2, and_3 represent the three biological replicates of each sample. Q20 and Q30 represent the percentage of bases with a Phred value greater than 20 and 30, respectively.
| Samples | Total_Reads | Clean_Reads | %>Q20 | %>Q30 | Mapped Reads (%) | Secondary Alignments (%) | Unique Mapped (%) |
|---|---|---|---|---|---|---|---|
| BXK_1 | 81,727,748 | 81,727,706 | 97.81% | 93.52% | 67,113,867 (67.24) | 18,086,546 (18.12) | 49,027,321 (49.12) |
| BXK_2 | 93,641,990 | 93,641,948 | 97.87% | 93.71% | 76,691,067 (67.22) | 20,445,351 (17.92) | 56,245,716 (49.3) |
| BXK_3 | 106,129,474 | 106,129,422 | 97.96% | 93.97% | 86,499,777 (66.63) | 23,691,204 (18.25) | 62,808,573 (48.38) |
| HXK_1 | 91,740,416 | 91,740,386 | 97.92% | 93.85% | 77,487,325 (68.14) | 21,970,557 (19.32) | 55,516,768 (48.82) |
| HXK_2 | 96,117,694 | 96,117,654 | 97.73% | 93.31% | 81,692,006 (68.9) | 22,455,670 (18.94) | 59,236,336 (49.96) |
| HXK_3 | 94,944,072 | 94,944,020 | 97.78% | 93.44% | 81,438,637 (69.49) | 22,253,903 (18.99) | 59,184,734 (50.5) |