Figure 2.
Characteristics of 180 Cavalier King Charles Spaniels (CKCS) at two low diversity loci as assayed using genotyping arrays. (a) Minor allele frequency (MAF) throughout the NEBL gene region chr2:11,650,000 to chr2:12,650,000, (b) MAF throughout the HDGFL1 region chr7:40,745,000 to chr7:41,746,000. (c) Regional pairwise linkage disequilibrium by r2 (LD) (grey dots) with the NEBL3 variant at chr2:11 979 724 (red dot) and other NEBL variant loci shown as blue dots. (d) Regional pairwise LD (grey dots) with the HDGFL1 variant predictor chr7:41 248 384 (coding variant at 7:41 245 057) (blue dot). Shaded regions represent the respective gene spans.