Table 2.
Effects of sampling date and snow manipulation treatments on gene expression in Scots pine seedlings.
| Gene | Sampling date | Snow manipulation treatment | Interaction | Gene | Sampling date | Snow manipulation treatment | Interaction |
|---|---|---|---|---|---|---|---|
|
SUS
(log) |
20.975 (1) p < 0.001 |
1.569 (3) p = 0.666 |
3.136 (3) p = 0.371 |
RBCS
(log) |
10.152 (1) p = 0.001 |
0.662 (3) p = 0.882 |
0.250 (3) p = 0.969 |
| SPS | 15.625 (1) p < 0.001 |
4.439 (3) p = 0.218 |
3.153 (3) p = 0.369 |
MSHMT | 60.076 (1) p < 0.001 |
15.918 (3) p = 0.001 |
13.512 (3) p = 0.004 |
| GOLS2 (log) | 0.062 (1) p = 0.803 |
6.151 (3) p = 0.105 |
5.458 (3) p = 0.141 |
LEA
(log) |
46.840 (1) p < 0.001 |
1.460 (3) p = 0.692 |
3.929 (3) p = 0.269 |
| B3GALT (log) | 132.726 (1) p < 0.001 |
28.827 (3) p < 0.001 |
14.068 (3) p = 0.003 |
DHN3
(log) |
54.223 (1) p < 0.001 |
9.240 (3) p = 0.026 |
5.587 (3) p = 0.134 |
| WAXY1 | 3.519 (1) p = 0.061 |
6.901 (3) p = 0.075 |
1.494 (3) p = 0.684 |
CAT | 2.418 (1) p = 0.314 |
13.433 (3) p = 0.004 |
1.993 (3), p = 0.574 |
|
SS3
(log) |
17.400 (1) p < 0.001 |
15.207 (3) p = 0.002 |
3.089 (3) p = 0.378 |
SOD
(log) |
51.786 (1) p < 0.001 |
3.558 (3) p = 0.313 |
7.522 (3) p = 0.057 |
|
AMY1
(log) |
91.881 (1) p < 0.001 |
0.759 (3) p = 0.859 |
3.353 (3) p = 0.340 |
ADC
(log) |
0.018 (1) p = 0.893 |
4.623 (3) p = 0.202 |
2.651 (3) p = 0.449 |
|
BMY1
(log) |
0.804 (1) p = 0.370 |
0.662 (3) p = 0.882 |
0.457 (3) p = 0.928 |
ATG8 | 0.331 (1) p = 0.565 |
13.720 (3) p = 0.003 |
8.534 (3) p = 0.036 |
| SEX1 | 7.068 (1) p = 0.008 |
1.850 (3) p = 0.604 |
4.737 (3) p = 0.192 |
G1
(log) |
44.889 (1) p < 0.001 |
20.658 (3) p < 0.001 |
4.737 (3) p = 0.192 |
| BG | 22.855 (1) p < 0.001 |
8.651 (3) p = 0.034 |
2.660 (3) p = 0.447 |
CRY1
(log) |
55.952 (1) p < 0.001 |
9.966 (3) p = 0.019 |
4.738 (3) p = 0.192 |
|
PK
(log) |
64.466 (1) p < 0.001 |
27.803 (3) p < 0.001 |
24.845 (3) p < 0.001 |
CRY2
(log) |
24.831 (1) p < 0.001 |
9.309 (3) p = 0.025 |
3.956 (3) p = 0.266 |
|
PFP
(log) |
28.484 (1) p < 0.001 |
4.664 (3) p = 0.198 |
6.049 (3) p = 0.109 |
TOC1
(log) |
2.172 (1) p = 0.141 |
12.025 (3) p = 0.007 |
6.007 (3) p = 0.111 |
|
PDC
(log) |
82.223 (1) p < 0.001 |
6.517 (3) p = 0.089 |
1.475 (3) p = 0.688 |
PHYO | 0.651 (1) p = 0.420 |
22.904 (3) p < 0.001 |
12.356 (3) p = 0.006 |
|
ADH
(log) |
29.779 (1) p < 0.001 |
2.599 (3) p = 0.458 |
1.348 (3) p = 0.718 |
PHYN
(log) |
19.875 (1) p < 0.001 |
17.367 (3) p = 0.001 |
12.127 (3) p = 0.007 |
Analysis of deviances for the hypothesis tested (sampling date and snow manipulation treatment as the main effects and their interaction) for gene expression. The chi-squared values, the degrees of freedom (in the parenthesis) and the corresponding p-values are presented. If the response in the model is log-transformed, log is mentioned in the parenthesis. The genes with significant (< 5% risk level) treatment effect and/or its interaction with sampling date are printed in bold.