Table 5.
Significant promoter regions (+/− 1000 bp from TSS) in MTs *.
| TSS | LogFC | FDR Corrected p-Value | Gene | Class |
|---|---|---|---|---|
| chr17:73070401 | 0.59 | 9.50 × 10−6 | AC111186.1 | Pseudogene |
| chr17:75148756 | 0.36 | 4.01 × 10−4 | RNU4–47P | snRNA |
| chr19:48673949 | 0.60 | 8.84 × 10−4 | ZSWIM9 | Protein coding |
| chr11:46134769 | 0.55 | 1.51 × 10−3 | AC024475.1 | miRNA |
| chr4:111866955 | 0.30 | 1.81 × 10−3 | LYPLA1P2 | Pseudogene |
| chr12:7072409 | 0.25 | 6.45 × 10−3 | U47924.27 | lincRNA |
| chr1:242187356 | –0.14 | 6.93 × 10−3 | RNU6–1139P | snRNA |
| chr12:7072408 | 0.25 | 7.37 × 10−3 | EMG1 | Protein coding |
| chr11:93971316 | 1.04 | 1.67 × 10−2 | RP11–680H20.2 | lincRNA |
| chr2:47454056 | –0.67 | 4.96 × 10−2 | AC106869.2 | lincRNA |
* TSS = transcription start site, logFC = log2 fold change; positive logFC = hypermethylated in CP; negative logFC = hypomethylated in CP.