Table 2.
Family-specific indels identified from the intron matrix of 17 plastomic genes among Saxifragales.
Taxa | Total | trnA | trnI | trnK | trnL | trnV | atpF | clpPa | clpPb | ndhA | ndhB | petB | petD | rpl16 | rpl2 | rpoC1 | rps12 | rps16 | ycf3a | ycf3b |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Alting. | 10/4/14 | - | 1/-/1 | 2/1/3 | - | -/1/1 | 2/-/2 | - | - | - | - | - | 1/-/1 | 1/-/1 | - | 1/-/1 | - | 1/-/1 | -/1/1 | 1/1/2 |
Cercidi. | 2/3/5 | - | - | - | - | - | - | -/1/1 | - | 1/-/1 | - | - | -/1/1 | - | - | 1/-/1 | - | -/1/1 | - | - |
Crass. | 26/15/41 | - | 1/-/1 | 2/1/3 | 1/1/2 | -/1/1 | - | 2/2/4 | 5/-/5 | 3/1/4 | - | 1/1/2 | 0/2/2 | 1/1/2 | 1/-/1 | -/1/1 | - | 5/1/6 | 2/2/4 | 2/1/3 |
Daphni. | 1/2/3 | - | - | -/1/1 | - | - | - | - | -/1/1 | - | - | 1/-/1 | - | - | - | - | - | - | - | - |
Grossu. | 6/6/12 | - | 1/-/1 | - | - | 1/-/1 | -/1/1 | - | - | -/1/1 | - | - | 3/-/3 | 1/2/3 | - | - | - | -/1/1 | - | -/1/1 |
Halora. | 5/11/16 | -/1/1 | - | 1/-/1 | - | - | -/2/2 | 1/-/1 | - | 2/3/5 | - | - | - | - | - | -/2/2 | - | -/1/1 | 1/1/2 | -/1/1 |
Hama. | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
Itea. | 2/8/10 | - | - | -/2/2 | - | - | - | - | - | -/1/1 | -/1/1 | - | - | 1/1/2 | - | -/1/1 | - | -/2/2 | - | 1/-/1 |
Paeonia. | 43/39/82 | 1/-/1 | 3/2/5 | 3/4/7 | - | 2/2/4 | 2/6/8 | 4/3/7 | 2/3/5 | 5/1/6 | - | - | 5/4/9 | 3/4/7 | -/1/1 | 2/3/5 | - | 6/4/10 | 3/1/4 | 2/1/3 |
Pentho. | 2/5/7 | - | 1/-/1 | -/1/1 | - | 1/-/1 | -/1/1 | -/1/1 | - | -/1/1 | - | -/1/1 | - | - | - | - | - | - | - | - |
Saxifra. | 4/2/6 | - | - | - | - | - | - | - | 3/-/3 | - | - | -/2/2 | 1/-/1 | - | - | - | - | - | - | - |