REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Chemicals, peptides, and recombinant proteins | ||
(+)-α-Pinene 98% | Sigma-Aldrich | P45680-100ML |
Pentyl acetate 99% | Sigma-Aldrich | 109584-250ML |
Pure mineral oil | Fisher Scientific | BP26291 |
Experimental models: Organisms/strains | ||
Mouse: C57BL/6J-Tg(Thy1-GCaMP6f) - GP5.5 | The Jackson Laboratory Dana et al., 2014 | Strain #: 024276 RRID: IMSR_JAX:024276 |
Software and algorithms | ||
Custom MATLAB analysis codes | This paper | https://doi.org/10.5281/zenodo.7226595 |
MATLAB 2022a | Mathworks | https://www.mathworks.com/products/matlab.html |
Anaconda 2 Distribution 5.1.0/Python 2.7.0 | Anaconda Inc. | https://www.anaconda.com/ |
Arduino IDE 1.6.12 | Arduino | https://www.arduino.cc/en/software/OldSoftwareReleases |
CaImAn-MATLAB | Flatiron Institute | https://github.com/flatironinstitute/CaImAn-MATLAB |
CaImAn | Flatiron Institute | https://github.com/flatironinstitute/CaImAn |
Fiji | Schindelin et al., 2012 | https://imagej.net/software/fiji/ |
PrarieView Imaging Software 5.9 | Bruker | https://www.bruker.com/en.html |
Other | ||
Arduino Mega 2560 Microcontroller | Arduino | https://store-usa.arduino.cc/products/arduino-mega-2560-rev3 |
Teensy 3.2 Development Board | PJRC | https://www.pjrc.com/store/teensy32.html |
SparkFun Capacitive Touch Breakout | Sparkfun | SEN-12041 |
SparkFun MP3 Player Shield | Sparkfun | DEV-12660 |
Ultima Multiphoton Microscope | Bruker | https://www.bruker.com/en.html |
GaAsP photomultiplier tube | Hamamatsu | 7422P-40 |
Mai Tai DeepSee Laser | Spectra-Physics | https://www.spectra-physics.com/en/f/mai-tai-deepsee-ultrafast-laser |
MakerBot Replicator 2X 3D Printer | MakerBot | MP04952 |
Cranial window Cannula Fabrication | New Jersey Precision Technologies, Inc. | 54549-001 |
Cranial window Cannula stainless steel tubing 1.5 mm x1.8x12″ | McMaster Carr | https://www.mcmaster.com/8988K17/ |
3 mm diameter coverslip | Warner Instruments | 64-0720 |
RIVETS modified headpost | Osborne and Dudman, 2014 | HHMI Janelia |
UV curing optical adhesive | Norland products | NOA-61 |
3 mm Sterile Disposable Biopsy Punch | Integra LifeSciences | 33-32 |
C&B Metabond® Quick Adhesive Cement System | Parkell | S380 |