Table 2. Data collection and refinement statistics for Pfs230 D1 — nanobody complexes.
Pfs230 D1 — F5 | Pfs230 D1 — F10 | |
---|---|---|
PDB ID | 7UST | 7USV |
Data collection statistics | ||
Wavelength (Å) | 0.953732 | 0.953732 |
Space group | C2221 | P212121 |
Cell axes (Å) (a, b, c) | 42.30, 84.18, 184.88 | 48.08, 101.22, 148.18 |
Cell angles (°) (α, γ, β) | 90, 90, 90 | 90, 90, 90 |
Resolution range (Å) | 42.09–1.70 (5.07–1.70)1 | 47.89–2.10 (2.22–2.10)1 |
Completeness (%) | 99.9 (99.2) | 99.5 (96.9) |
Total no. of reflections | 445981 (72424) | 422617 (65033) |
Unique reflections | 36891 (5877) | 43435 (6897) |
Redundancy | 12.1 (12.4) | 9.7 (9.4) |
Rmeas (%) | 5.0 (104.7) | 24.2 (143.4) |
CC1/2 (%) | 100.0 (82.9) | 98.0 (68.3) |
I/σ | 24.85 (2.17) | 11.83 (1.76) |
Wilson B (Å2) | 39.34 | 40.78 |
Refinement statistics | ||
Rwork/Rfree (%) | 18.9/22.0 | 19.8/23.5 |
No. of atoms | ||
Protein | 2105 | 5221 |
Water | 118 | 349 |
Ions | 15 | 40 |
B factors (Å2) | ||
Chain A | 42.5 | 47.8 |
Chain B | 60.2 | 50.8 |
Chain C | 34.2 | |
Chain D | 36.5 | |
Water | 50.4 | 47.5 |
Ions | 83.3 | 77.7 |
R.m.s. deviations | ||
Bond lengths (Å) | 0.014 | 0.003 |
Bond angles (°) | 1.261 | 0.585 |
Validation | ||
Ramachandran plot | ||
Outliers (%) | 0.0 | 0.0 |
Favored (%) | 98.1 | 98.7 |
Rotamer outliers (%) | 0.0 | 0.0 |
C-beta outliers | 0 | 0 |
MolProbity score | 1.21 | 1.06 |
The values in parentheses represent the highest-resolution shell.