Table 1.
Types, names, and numbers of wheat PHD-finger genes.
| Domain type | Wheat triad | Rice orthologs | Arabidopsis thaliana orthologs | Gene number | Chr | Genomes |
|---|---|---|---|---|---|---|
| PHD | TaPHD1/TaPHD8/TaPHD15 | 3 | 1 | ABD | ||
| TaPHD5/TaPHD12 | 2 | 1 | AB | |||
| TaPHD21/TaPHD34/TaPHD46 | 3 | 2 | ABD | |||
| TaPHD62/TaPHD73/TaPHD84 | OsPHD5 | 3 | 3 | ABD | ||
| TaPHD82 | 1 | 3 | D | |||
| TaPHD94/TaPHD114/TaPHD128 | OsPHD24 | 3 | 4 | ABD | ||
| TaPHD218/TaPHD226/TaPHD237 | OsPHD24 | 3 | 7 | ABD | ||
| TaPHD98/TaPHD110/TaPHD124 | 3 | 4 | ABD | |||
| TaPHD99/TaPHD109/TaPHD123 | OsPHD55 | AtPHD6 | 3 | 4 | ABD | |
| TaPHD101/TaPHD107/TaPHD121 | OsPHD19 | MS1,MMD1 | 3 | 4 | ABD | |
| TaPHD143/TaPHD160/TaPHD177 | OsPHD52 | MS1,MMD1 | 3 | 5 | ABD | |
| TaPHD103 | 1 | 4 | A | |||
| TaPHD137/TaPHD154/TaPHD172 | 3 | 5 | ABD | |||
| TaPHD146/TaPHD163/TaPHD180 | OsPHD58 | AtPHD54 | 3 | 5 | ABD | |
| TaPHD168/TaPHD185 | 2 | 5 | BD | |||
| TaPHD186 | OsPHD11 | 1 | 5 | D | ||
| TaPHD192/TaPHD201/TaPHD209 | OsPHD14,OsPHD37 | AtPHD8,AtPHD37 | 3 | 6 | ABD | |
| PHD-PHD | TaPHD135/TaPHD152/TaPHD170 | OsPHD59 | AtPHD32,AtPHD40 | 3 | 5 | ABD |
| TaPHD144/TaPHD161/TaPHD178 | AtPHD29 | 3 | 5 | ABD | ||
| TaPHD216/TaPHD224/TaPHD235 | OsPHD48 | 3 | 7 | ABD | ||
| Alifn-PHD | TaPHD4/TaPHD11/TaPHD18 | OsPHD30 | AL1,AL2 | 3 | 1 | ABD |
| TaPHD6/TaPHD13/TaPHD19 | OsPHD31 | AL6,AL7 | 3 | 1 | ABD | |
| TaPHD26/TaPHD39/TaPHD51 | OsPHD44 | AL3.AL4,AL5 | 3 | 2 | ABD | |
| TaPHD31/TaPHD44/TaPHD56 | AL1,AL2,AL3.AL4,AL5,AL6,AL7 | 3 | 2 | ABD | ||
| TaPHD64/TaPHD75/TaPHD86 | OsPHD7 | AL6,AL7 | 3 | 3 | ABD | |
| TaPHD100/TaPHD108/TaPHD122 | OsPHD56 | AL6,AL7 | 3 | 4 | ABD | |
| TaPHD167/TaPHD184 | OsPHD23,OsPHD42 | AL1,AL2 | 2 | 5 | BD | |
| TaPHD104/TaPHD229/TaPHD230/TaPHD243/TaPHD244 | AL1,AL2,AL3.AL4,AL5,AL6,AL7 | 5 | 4(7) | A(DD)UU | ||
| ARID-PHD | TaPHD142/TaPHD159/TaPHD176 | 3 | 5 | ABD | ||
| RING-PHD | TaPHD23/TaPHD36/TaPHD48 | OsPHD46 | AtPHD30 | 3 | 2 | ABD |
| TaPHD93/TaPHD115/TaPHD129 | OsPHD17 | AtPHD30 | 3 | 4 | ABD | |
| ING-PHD | TaPHD105/TaPHD119/TaPHD133 | OsPHD16 | ING1 | 3 | 4 | ABD |
| TaPHD148/TaPHD165/TaPHD182 | OsPHD21 | ING2 | 3 | 5 | ABD | |
| BAH-PHD | TaPHD27/TaPHD40/TaPHD53 | OsPHD41 | SHL1 | 3 | 2 | ABD |
| TaPHD141/TaPHD158/TaPHD175 | OsPHD49,OsPHD51 | EBS | 3 | 5 | ABD | |
| TaPHD149/TaPHD166/TaPHD183 | OsPHD22 | SHL1 | 3 | 5 | ABD | |
| Jas-PHD | TaPHD28/TaPHD41/TaPHD52 | OsPHD40 | AtPHD1,AtPHD61,AtPHD62 | 3 | 2 | ABD |
| TaPHD147/TaPHD164/TaPHD181 | OsPHD20 | AtPHD1,AtPHD61,AtPHD62 | 3 | 5 | ABD | |
| TaPHD30/TaPHD43/TaPHD55 | OsPHD25 | 3 | 2 | ABD | ||
| TaPHD33/TaPHD45/TaPHD58 | ROS4 | 3 | 2 | ABD | ||
| TaPHD22/TaPHD35/TaPHD47 | OsPHD47 | AtPHD68,AtPHD70 | 3 | 2 | ABD | |
| TaPHD92/TaPHD116/TaPHD130 | OsPHD47 | AtPHD68,AtPHD70 | 3 | 4 | ABD | |
| TaPHD66/TaPHD76/TaPHD88 | OsPHD9 | 3 | 3 | ABD | ||
| TaPHD68/TaPHD78 | OsPHD9 | 2 | 3 | AB | ||
| TaPHD106/TaPHD212 | OsPHD32 | AtPHD24,AtPHD26,AtPHD27,AtPHD41 | 2 | 4(7) | A(A) | |
| TaPHD220/TaPHD227/TaPHD238 | OsPHD38 | AtPHD24,AtPHD26,AtPHD27,AtPHD41 | 3 | 7 | ABD | |
| DDT-PHD | TaPHD25/TaPHD38/TaPHD50 | OsPHD45 | DDP1,DDP2 | 3 | 2 | ABD |
| TaPHD97/TaPHD112/TaPHD125 | OsPHD54 | DDP3 | 3 | 4 | ABD | |
| TaPHD138/TaPHD155/TaPHD173 | OsPHD54 | DDP3 | 3 | 5 | ABD | |
| zf-HC5HC2H-PHD | TaPHD59/TaPHD70/TaPHD80 | OsPHD1 | 3 | 3 | ABD | |
| PHD-Oberon_cc | TaPHD91/TaPHD118/TaPHD132 | 3 | 4 | ABD | ||
| TaPHD95/TaPHD111/TaPHD127 | OBE1,OBE2 | 3 | 4 | ABD | ||
| TaPHD136/TaPHD153/TaPHD171 | OBE1,OBE2 | 3 | 5 | ABD | ||
| TaPHD117/TaPHD131 | 2 | 4 | BD | |||
| PHD-FN3 | TaPHD3/TaPHD10/TaPHD17 | VIN3 | 3 | 1 | ABD | |
| TaPHD134/TaPHD151/TaPHD169 | VIN3 | 3 | 5 | ABD | ||
| TaPHD190/TaPHD199/TaPHD207 | VIN3 | 3 | 6 | ABD | ||
| PHD-SANT | TaPHD63/TaPHD74/TaPHD85 | 3 | 3 | ABD | ||
| TaPHD194/TaPHD203/TaPHD211 | 3 | 6 | ABD | |||
| PHD-WHIM1 | TaPHD102/TaPHD191/TaPHD200/TaPHD208 | MBD9 | 4 | 6(4) | (A)ABD | |
| PHD-SET | TaPHD67/TaPHD77/TaPHD89 | OsPHD8 | ATXR5,ATXR6 | 3 | 3 | ABD |
| TaPHD187/TaPHD196/TaPHD242 | OsPHD10 | ATXR5,ATXR6 | 3 | 6 | AB(U) | |
| PWWP-PHD-SET | TaPHD60/TaPHD71/TaPHD81 | OsPHD2,OsPHD4 | ATX3,ATX4,ATX5 | 3 | 3 | ABD |
| PWWP-FYRN-FYRC-PHD-SET | TaPHD140/TaPHD157/TaPHD174 | OsPHD50 | ATX1,ATX2 | 3 | 5 | ABD |
| PHD-BAH | TaPHD234 | 1 | 7 | D | ||
| PHD-BAH-AAA | TaPHD214/TaPHD222/TaPHD232 | OsPHD33 | ORC1A,ORC1B | 3 | 7 | ABD |
| PHD-homeodomain | TaPHD7/TaPHD14/TaPHD20 | PRHA | 3 | 1 | ABD | |
| TaPHD61/TaPHD72/TaPHD83 | OsPHD35 | HAT3.1 | 3 | 3 | ABD | |
| TaPHD189/TaPHD198/TaPHD206 | 3 | 6 | ABD | |||
| PHD-PLN03142 | TaPHD65/TaPHD87 | 2 | 3 | AD | ||
| TaPHD195/TaPHD204/TaPHD241 | 3 | 6 | ABD | |||
| PHD-RING | TaPHD2/TaPHD9/TaPHD16 | OsPHD29 | SIZ1 | 3 | 1 | ABD |
| TaPHD69/TaPHD79/TaPHD90 | SIZ1 | 3 | 3 | ABD | ||
| TaPHD96/TaPHD113/TaPHD126 | SIZ1 | 3 | 4 | ABD | ||
| TaPHD139/TaPHD156 | SIZ1 | 2 | 5 | AB | ||
| PHD-JmjC-PLU1 | TaPHD219/TaPHD228/TaPHD239 | 3 | 7 | ABD | ||
| AAA_34-PHD-Helicase_C_4 | TaPHD32/TaPHD57 | OsPHD27 | EMB1135 | 2 | 2 | AD |
| TaPHD217/TaPHD225/TaPHD236 | OsPHD27 | EMB1135 | 3 | 7 | ABD | |
| PHD-zf-HC5HC2H-zf-HC5HC2H | TaPHD193/TaPHD202/TaPHD210 | OsPHD15,OsPHD34 | AtPHD18 | 3 | 6 | ABD |
| TaPHD215/TaPHD223/TaPHD233 | 3 | 7 | ABD | |||
| BRCT-BRCT-PHD | TaPHD24/TaPHD37/TaPHD49 | OsPHD18 | 3 | 2 | ABD | |
| TaPHD188/TaPHD197/TaPHD205 | OsPHD18 | 3 | 6 | ABD | ||
| PHD-SWIB-GYF-Plus3 | TaPHD120/TaPHD150/TaPHD240 | 3 | 4(5) | (A)BU | ||
| PHD-SWIB-Plus3-GYF | TaPHD145/TaPHD162/TaPHD179 | 3 | 5 | ABD | ||
| PHD-Chromo-Helicase_C-DUF | TaPHD213/TaPHD221/TaPHD231 | PKL | 3 | 7 | ABD | |
| PHD-Cohesin_HEAT-Nipped-B_C | TaPHD29/TaPHD42/TaPHD54 | EMB2773 | 3 | 2 | ABD | |