Fig. 6.

HIV DNA reservoir sequences are obscured by a cloud of non-clonal sequences from actively infected cells during early untreated infection in stochastic model simulations. (a) Richness of HIV DNA sequences within all infected cells. (b) Clonal sequence: total sequence population size ratio in all infected cells. (c) Richness: total sequence population size ratio within all infected cells. Each color corresponds to an individual as in Fig. 3. Sensitivity analysis of the mean and variance of the turnover rate are shown. (For interpretation of the references to color in this figure legend, the reader is referred to the Web version of this article.)