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. 2022 Dec 17;8(12):e12406. doi: 10.1016/j.heliyon.2022.e12406

Figure 3.

Figure 3

Molecular dynamics simulation analysis for the 1UZN-bionectin F complex. RSMD plots of the protein-ligand (1UZN and bionectin F) complex, ligand, and the protein back-bone for a 50 ns simulation (A). RMSF plot showing conformational fluctuations of the residues during the simulation, where interaction incidences are depicted by vertical green lines (B). The binding interactions of bionectin F with 1UZN during the simulation (C).