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. 2022 Dec 27;54:82. doi: 10.1186/s12711-022-00772-0

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© The Author(s) 2022

Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

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Fig. 2 — a Correlation (r), expressed as 1–r (in percentage), of the different estimates of inbreeding with true IBD inbreeding, and b Average difference between estimates of the rate of inbreeding depression (ΔID) and those obtained from true IBD inbreeding. All results in the study from Fig. 1, Additional file 5: Fig. S3, Additional file 6: Fig. S4 and Additional file 10: Fig. S7a–c were averaged (intervals denote 1 standard deviation). The estimates refer to pedigree records (F_PED; green bars) and to different marker frequency-based measures (F_VR1, F_VR2, F_YA1, F_YA2, F_LH1, F_LH2, F_q05; see text for definitions), assuming the frequencies of the base generation (blue bars), those of the current generation (yellow bars), or a constant frequency of 0.5 (purple bars). Estimates from runs of homozygosity are shown for fragments larger than 1 Mb (F_ROH-1) or 5 Mb (F_ROH-5). Only subscripts of estimators are shown for a better view