TABLE 1.
AlphaFold models validated after the release of Pfam 35.0
| pfamid | pfam_description | Accession | From | To | PDB hit | Z | RMSD | lali | %ide |
|---|---|---|---|---|---|---|---|---|---|
| PF03080 | Neprosin | O64859 | 184 | 395 | 7zvaA | 28.1 | 1.3 | 208 | 51 |
| PF03706 | Lysylphosphatidylglycerol synthase TM region | P75770 | 14 | 296 | 7duwA | 26.6 | 2.4 | 239 | 26 |
| PF03802 | Apo‐citrate lyase phosphoribosyl‐dephospho‐CoA transferase | P0A6G5 | 13 | 177 | 7dcmA | 27.6 | 0.9 | 165 | 99 |
| PF04113 | Gpi16 subunit, GPI transamidase component | E9QH65 | 77 | 628 | 7w72T | 52.5 | 7.8 | 520 | 69 |
| PF04114 | Gaa1‐like, GPI transamidase component | Q6AYM8 | 125 | 615 | 7w72A | 42.3 | 1.1 | 465 | 93 |
| PF04573 | Signal peptidase subunit | I1JRE6 | 1 | 165 | 7p2pB | 12.3 | 2.4 | 162 | 30 |
| PF06703 | Microsomal signal peptidase 25 kDa subunit (SPC25) | P58684 | 23 | 181 | 7p2qC | 13.5 | 2.5 | 156 | 27 |
| PF08014 | Domain of unknown function (DUF1704) | Q7TQE7 | 265 | 511 | 7z5gB | 33.9 | 0.7 | 247 | 66 |
| PF09773 | Meckelin (transmembrane protein 67) | E9QB24 | 156 | 982 | 7fh1A | 44.6 | 2.0 | 730 | 62 |
| PF10510 | Phosphatidylinositol‐glycan biosynthesis class S protein | Q96S52 | 22 | 547 | 7w72S | 44.4 | 2.7 | 511 | 92 |
| PF11380 | Stealth protein CR2, conserved region 2 | Q54UF6 | 90 | 198 | 7dxiB | 8.7 | 1.8 | 108 | 38 |
| PF11744 | Aluminum activated malate transporter | K7VD86 | 88 | 494 | 7vojA | 35.0 | 2.0 | 338 | 47 |
| PF12810 | Glycine rich protein | Q9UM73 | 726 | 987 | 7ls0B | 38.3 | 0.6 | 225 | 100 |
| PF15778 | UNC80 N‐terminal | Q8N2C7 | 16 | 236 | 7sx3E | 11.4 | 4.9 | 239 | 89 |
| PF17517 | IgGFc binding protein | Q9Y6R7 | 129 | 419 | 7wpqE | 13.8 | 3.7 | 252 | 33 |
Note: AlphaFold Database models are identified by UniProt accession and residue range. These examples have sequence identity >25% and query coverage >80% in structural alignment.