TABLE 3.
Related known functions
| Pfamid | pfam_description | PDB hit's family | PDB hit | Z | %ide | Type |
|---|---|---|---|---|---|---|
| PF01548 | Transposase | PF02075 Crossover junction endodeoxyribonuclease RuvC (CL0219) | 4ld0B | 11.7 | 15 | E |
| PF01955 | Adenosylcobinamide amidohydrolase | PF03576 Peptidase family S58 (CL0635) | 5xyoA | 11.0 | 6 | E |
| PF03859 | CG‐1 domain | PF08549 SWI/SNF and RSC complexes subunit Ssr4 N‐terminal (Holm, 2020) | 7k7vA | 9.7 | 25 | B |
| PF04479 | RTA1 like protein. 7 transmembrane helices. | PF01036 Bacteriorhodopsin‐like protein (CL0192) | 1x0k1 | 13.0 | 10 | T |
| PF04666 | DUF659 Protein of unknown function (transposase‐like proteins with no known function) | DNA transposase | 2apcA | 18.2 | 14 | E |
| PF04709 | Anti‐Mullerian hormone, N terminal region | PF00688 TGF‐beta propeptide | 6sf2F | 6.0 | 20 | B |
| PF04724 | Glycosyltransferase family 17 | PF00535 Glycosyl transferase family 2 | 6e4qA | 10.7 | 10 | E |
| PF04765 | Protein of unknown function (DUF616). A number of the members are thought to be glycosyltransferases. | PF03414 Glycosyltransferase family 6 | 2vs3A | 10.6 | 7 | E |
| PF04833 | COBRA‐like protein | PF00553 Cellulose‐binding domain | 6qfsA | 8.4 | 21 | B |
| PF05123 | S‐layer like family, N‐terminal region | PF07752 S‐layer protein | 3u2gA | 3.2 | 12 | S |
| PF05124 | S‐layer like family, C‐terminal region | PDB protein's sequence assigned to the same Pfam family, but link is missing from pdbmap. | 6npsA | 6.5 | 16 | S |
| PF05428 | Corticotropin‐releasing factor binding protein (CRF‐BP) | PF00431 CUB domain (CL0164). Involved in binding interaction partners. | 6fzwD | 8.9 | 21 | B |
| PF05458 | Cd27 binding protein (Siva). Zinc finger. | PF02318 FYVE‐like zinc finger (CL0390) | 2cjsC | 6.1 | 10 | B |
| PF06081 | Aromatic acid exporter family member 1 | PF06081 Aromatic acid exporter family member 1 | 7vg3B | 13.3 | 25 | T |
| PF06189 | 5′‐nucleotidase | Polynucleotide kinase | 5ujoB | 9.6 | 14 | E |
| PF06420 | Mitochondrial genome maintenance MGM101 | PF04098 Rad52/22 family double‐strand break repair protein | 5xs0G | 12.4 | 16 | B |
| PF06524 | NOA36 protein (zinc finger protein 330) | PF00643 B‐box zinc finger | 6imqA | 4.5 | 17 | B |
| PF07906 | ShET2 enterotoxin, N‐terminal region. Is a cysteine protease (Pearson et al., 2017) | Ubiquitin‐specific protease (Schlieker et al., 2007) | 2j7qA | 9.6 | 8 | E |
| PF07958 | Protein of unknown function (DUF1688). Involved in uracil catabolism | PF09171 N‐glycosylase/DNA lyase | 1xqpA | 11.9 | 12 | E |
| PF09317 | Acyl‐CoA dehydrogenase, C‐terminal, bacterial type | C‐terminal domain of acyl‐CoA dehydrogenase | 3owaA | 11.6 | 12 | E |
| PF10113 | FeGP cofactor biosynthesis protein, fibrillarin family | PF04055 Radical SAM superfamily (CL0036) | 3t7vA | 19.8 | 16 | E |
| PF10238 | E2 transcription factor associated phosphoprotein | PF03228 Yippee zinc‐binding/DNA‐binding Mis18, centromere assembly | 5hj0C | 9.2 | 15 | B |
| PF10337 | Putative ER transporter, 6TM, N‐terminal | PF11447 Aluminum activated malate transporter | 7vojA | 16.3 | 11 | T |
| PF10343 | Potential Queuosine, Q, salvage protein family. DNA glycosidase activity has been suggested. | PF09171 N‐glycosylase/DNA lyase | 1xqoA | 12.8 | 9 | E |
| PF11726 | Inovirus Gp2. Involved in viral DNA replication via phospho‐Tyr mechanism. | HUH‐endonuclease superfamily | 2x3gA | 7.8 | 11 | E |
| PF12141 | Beta‐mannosyltransferases | PF04041 beta‐1,4‐mannooligosaccharide phosphorylase (CL0143) | 3tawA | 20.8 | 11 | E |
| PF14249 | Tocopherol cyclase | Diels‐Alderase (pericyclase) | 7dmnA | 21.7 | 8 | E |
| PF14616 | Transcription regulator Rua1, C‐terminal | Transcriptional regulator KAISO | 2lt7A | 3.0 | 18 | B |
| PF15051 | FAM198 protein. UniProt annotates query protein as Golgi associated kinase 1b. | PF06702 Golgi casein kinase, C‐terminal, Fam20 | 5yh3A | 18.3 | 18 | E |
| PF15083 | Colipase‐like | PF01114 Colipase, N‐terminal domain; PF02740 Colipase, C‐terminal domain (CL0621) | 1lpbA | 3.2 | 22 | B |
| PF15704 | Mitochondrial ATP synthase subunit | Mitochondrial ATP synthase associated protein ASA4 | 6rdq4 | 9.0 | 13 | B |
| PF16094 | Proteasome assembly chaperone 4 | PF09754 Pac2 family (proteasome assembly chaperone) | 3wz2A | 17.5 | 8 | B |
| PF16887 | Domain of unknown function (DUF5081). Believed to be involved in type VII secretion system. | PF14011 EspG family (secretion‐associated proteins) | 4w4lC | 11.3 | 8 | T |
| PF17184 | Rit1 N‐terminal domain of tRNA modifying enzyme | PF00156 Phosphoribosyltransferase domain (CL0533) | 7kl7A | 4.4 | 9 | E |
| PF18143 | HAD domain phosphoesterases in Swiss Army Knife RNA repair proteins | Inorganic pyrophosphatase, member of the haloacid dehalogenase superfamily (CL0137) | 3qu2D | 8.2 | 10 | E |
| PF19043 | Nuclear cap binding complex subunit CBP66 | PF07065 Cell division cycle protein 123 | 4zgoA | 16.4 | 14 | B |
| PF19306 | Helicase Lhr winged helix domain | Winged helix domain of ATP‐dependent DNA helicase (Jones et al., 2018). | 5v9xA | 14.1 | 25 | B |
Note: Query family has no structural information in Pfam 35.0. Type: B, binding; E, enzyme; S, structural; T, transport.