| REAGENT or RESOURCE | SOURCE | IDENTIFIER |
|---|---|---|
| Antibodies | ||
| 19.7E | Robinson et al.19 | Patent WO2018106712A1 |
| 12.1F | Robinson et al.19 | Patent WO2018106712A1 |
| 25.10C | Robinson et al.19 | Patent WO2018106712A1 |
| 37.7H | Robinson et al.19 | Patent WO2018106712A1 |
| LAVA01 | This study | N/A |
| LAVA02 | This study | N/A |
| LAVA03 | This study | N/A |
| LAVA04 | This study | N/A |
| Goat anti-mouse | Seracare | Cat# 5450-0011 |
| HRP-labeled goat anti-rabbit IgG | Jackson Immunoresearch | Cat# 111-035-144 |
| HRP-labeled donkey anti-guinea pig IgG | Jackson Immunoresearch | Cat# 706-035-148 |
| Donkey anti-rabbit IgG-PE | Biolegend | Cat# 406421 |
| Goat-anti-rabbit IgM-PE | Southern Biotech | Cat# 4020-09 |
| PE-labeled anti-human CD16 antibody | Biolegend | Cat# 302008 |
| Fixable Viability Dye eF780 | eBioscience | Cat# 65-0865-14 |
| Bacterial and virus strains | ||
| Lassa virus (Josiah strain) | Philipps-University Marburg | GenBank: P08669 |
| Guinea-pig adapted Lassa virus (Josiah strain) | Safronetz et al.35 | GenBank: P08669 |
| NEB 5-alpha Competent E. coli (High Efficiency) | New England Biolabs | Cat# C2987H |
| Biological samples | ||
| Sera immunized rabbits | This study | N/A |
| Sera immunized guinea pigs | This study | N/A |
| PBMCs immunized rabbits | This study | N/A |
| PBMCs naïve humans | Sanquin Blood bank Amsterdam | N/A |
| Chemicals, peptides, and recombinant proteins | ||
| I53-50B.4PT1 | Walls et al.44 | N/A |
| IL-15 | Thermo Scientific | Cat# BMS319 |
| Tween20 | Sigma-Aldrich | Cat# P1379-500ML |
| Bovine Serum Albumin (fraction V) | Thermo Scientific | Cat# 9048-46-8 |
| Milk powder | PanReac AppliChem | Cat# A0830 |
| 1% 3,3′,5,5′-tetranethylbenzidine | Sigma-Aldrich | Cat# 88748 |
| EDTA (Titriplex III) | Sigma-Aldrich | Cat# 1.08418.1000 |
| Saquinavir | NIH-ARP | Cat# 4658 |
| DEAE-dextran | Sigma-Aldrich | Cat# D9885 |
| Mass spectrometry grade trypsin | Promega | Cat# V5280 |
| Sequencing grade chymotrypsin | Promega | Cat# V1061 |
| Alpha lytic protease | Sigma-Aldrich | Cat# A6362 |
| Acetonitrile, 80%, 20% Water with 0.1% Formic Acid, Optima LC/MS | Thermo Scientific | Cat# 15431423 |
| Water with 0.1% Formic Acid (v/v), Optima™ LC/MS Grade | Thermo Scientific | Cat# LS118-212 |
| Acetonitrile | Thermo Scientific | Cat# 10489553 |
| Trifluoroacetic acid | Thermo Scientific | Cat# 10155347 |
| Dithiothreitol | Sigma-Aldrich | Cat# 43819 |
| Iodacetamide | Sigma-Aldrich | Cat# I1149 |
| Phorbol myristate acetate (PMA) | Sanbio | Cat# P8139-1MG |
| Urea | Sigma-Aldrich | U5378-1KG |
| Glu-C | Promega | Cat# V1651 |
| BioLock solution | IBA Lifesciences | Cat# 2-0205-050 |
| Reporter Lysis buffer | Promega | Cat# E3971 |
| PBS | Thermo Scientific | Cat# 10010023 |
| TBS | Alfa Aesar | Cat# J60764.K2 |
| Glutaraldehyde | Sigma-Aldrich | Cat# |
| PEI MAX | Polysciences | Cat# 24765-1 |
| 3,3’,5,5’-tetranethylbenzidine | Sigma-Aldrich | Cat# T4444 |
| Squalene Emulsion adjuvant | Polymun Scientific | N/A |
| AEC chromogen | Enquire Bioreagents | Cat# AB64252 |
| Galanthus Nivalis Lectin | Vector Laboratories | Cat# L-1240-5 |
| Amersham High Molecular Weight marker | Sigma-Aldrich | Cat# 17-0445-01 |
| 1-Ethyl-3-(3-dimethylaminopropyl) carbodiimide | Thermo Scientific | Cat# A35391 |
| Sulfo-N-Hydroxysulfosuccinimide | Thermo Scientific | Cat# A39269 |
| Casein buffer | Thermo Scientific | Cat# 37528 |
| Penicillin | Sigma-Aldrich | Cat# P3032-10MI |
| Streptomycin | VWR | Cat# 382-EU-100G |
| Penicillin-Streptomycin (5,000 U/mL) | Gibco | Cat# 15070063 |
| Gentamicin | Corning | Cat# 30-005-CR |
| Fugene | Promega | Cat# E5911 |
| Carboxymethylcellulose | Thermo Scientific | Cat# M352-500 |
| Neutral buffered formalin | Thermo Scientific | Cat# 245-684 |
| Ionomycin | Sanbio | Cat# 10004974-5 |
| Streptavidin BB515 | BD | Cat# 564453 |
| Streptavidin AF647 | Biolegend | Cat# 405237 |
| Streptavidin BV421 | Biolegend | Cat# 405226 |
| Lauryl maltose neopentyl glycol | Anatrace | Cat# NG310 |
| Uranyl Formate | Electron Microscopy Sciences | Cat #D310 25 GM |
| Critical commercial assays | ||
| Bright-Glo Luciferase Assay System | Promega | Cat# E2620 |
| Deposited data | ||
| 3D map of GPCysR4(Josiah) from localized reconstruction of GPCysR4(Josiah)-I53-50NP | This paper | EMDB: EMD-25107 |
| 3D model of GPCysR4(Josiah) from localized reconstruction of GPCysR4(Josiah)-I53-50NP | This paper | PDB: 7SGD |
| 3D map of I53-50NP from focused refinement of GPCysR4(Josiah)-I53-50NP | This paper | EDMB: EMD-25108 |
| 3D model of I53-50NP from focused refinement of GPCysR4(Josiah)-I53-50NP | This paper | PDB: 7SGE |
| 3D map of GPCysR4(Josiah)-I53-50A.1NT1 in complex with LAVA01 antibody | This paper | EMDB: EMD-25109 |
| 3D model of GPCysR4(Josiah)-I53-50A.1NT1 in complex with LAVA01 antibody | This paper | PDB: 7SGF |
| Experimental models: Cell lines | ||
| FreeStyle 293F cells | Thermo Scientific | Cat# R79007 |
| HEK 293T cells | ATCC | Cat# CRL-11268 |
| Vero cells | ATCC | Cat# CCL-81 |
| Vero E6 cells | ATCC | Cat# CRL-i586 |
| TZM-bl cells | NIH ARRRP | Cat# 8129 |
| THP-1 cells | ATCC | Cat# TIB-202 |
| Experimental models: Organisms/strains | ||
| New Zealand White rabbits | Covance Research Products, Inc | N/A |
| Hartley Guinea Pigs | UTMB | N/A |
| Recombinant DNA | ||
| GPCysR4(Josiah)-StreptagII pPPI4 plasmid | This study | N/A |
| GPCysR4(Josiah)-I53-50A.1NT1-Strep-tagII pPPI4 plasmid | This study | N/A |
| GPCysR4(Josiah)-I53-dn5B-StreptagII pPPI4 plasmid | This study | N/A |
| GPCysR4(Josiah)-I53-50A.1NT1-Avi-His pPPI4 plasmid | This study | N/A |
| GPCysR4(NIG08-A41)-I53-50A.1NT1-Avi-His pPPI4 plasmid | This study | N/A |
| Furin pPPI4 plasmid | Brouwer et al.29 | N/A |
| Fc-tagged LAMP-1 ectodomain | Jae et al.15 | N/A |
| 19.7E HC, 19.7E LC, 12.1F HC, 12.1F LC, 25.10C HC, 25.10C LC, 37.7H HC, 37.7H LC gene fragments | Integrated DNA Technologies | N/A |
| Software and algorithms | ||
| Dynamics | Wyatt Technology Corporation | N/A |
| ByosTM (Version 4.0) | Protein Metrics Inc. | https://www.proteinmetrics.com/products/byonic/ |
| GraphPad Prism v8 | GraphPad | N/A |
| XCalibur Version v4.2 | Thermo Scientific | N/A |
| Orbitrap Fusion Tune application v3.1 | Thermo Scientific | N/A |
| FlowJo v.10.7.1 | Flowjo | N/A |
| UCSF ChimeraX | Goddard et al.45 | N/A |
| cryoSPARC.v2 | Punjani et al.46 | N/A |
| Leginon | Suloway et al.47 | N/A |
| MotionCor2 | Zheng et al.48 | N/A |
| GCTF | Zhang49 | N/A |
| Relion/3.0 | Zivanov et al.50 | N/A |
| Localized Reconstruction v1.2.0 | Ilca et al.51 | N/A |
| AbodyBuilder | Leem et al.52 | N/A |
| Coot | Casañal et al.53 | N/A |
| EMRinger | Barad et al.54 | N/A |
| MolProbity | Williams et al.55 | N/A |
| Appion | Lander et al.56 | N/A |
| Other | ||
| EasySpray PepMap RSLC C18 column (75 μm x 75 cm) |
Thermo Scientific | Cat# ES805 |
| Fetal bovine serum | R&D Biosystems | Cat# S11150H |
| Fetal calf serum | Gibco | Cat# 10270/106 |
| C18 ZipTip | Merck Milipore | Cat# ZTC18S008 |
| Immobilized papain resin | Thermo Scientific | Cat# 20341 |
| Protein A resin | Thermo Scientific | Cat# 20333 |
| CD56 MicroBeads, human | Miltenyi Biotec | Cat# 130-050-401 |
| CaptureSelect IgG-Fc resin | Thermo Scientific | Cat# 2942852010 |
| FluoSpheres NeutrAvidin-Labeled Microspheres | Thermo Scientific | Cat# F8776 |
| Vivaspin 6, 10.000 Da MWCO, polyethersulfone | Sigma-Aldrich | Cat# GE28-9322-96 |
| Vivaspin 20, 50.000 Da MWCO, polyethersulfone | Sigma-Aldrich | Cat# GE28-9323-62 |
| Vivaspin 500, 3.000 Da MWCO, polyethersulfone | Sigma-Aldrich | Cat# GE28-9322-18 |
| Amicon 15, 10.000 Da MWCO, cellulose | Sigma-Aldrich | Cat# UFC901024 |
| Slide-A-Lyzer Mini dialysis device 10 kDa MWCO | Thermo Scientific | Cat# 88401 |
| PepMap100 C18 3UM 75UMx2CM Nanoviper | Thermo Scientific | Cat# 164946 |
| Ni-NTA agarose | QIAGEN | Cat# 30210 |
| Novex Wedgewell 10-20% Tris-Glycine gels | Thermo Scientific | Cat# XP10202BOX |
| NuPAGE 4-12% Bis-Tris gels | Thermo Scientific | Cat# NP0321BOX |
| Superose 6 increase 10/300 GL | Sigma-Aldrich | Cat# GE29-0915-96 |
| HiLoad 16/600 Superdex pg200 | Sigma-Aldrich | Cat# GE28-9893-35 |
| Econo-column chromatography columns | BIO RAD | Cat# 7371512 |
| NGC chromatography system | BIO RAD | N/A |
| Octet K2 system | Sartorius (FortéBio) | N/A |
| Octet Biosensors: Streptavidin | Sartorius (FortéBio) | Cat# 18-5019 |
| Octet Biosensors: Protein A | Sartorius (FortéBio) | Cat# 18-5010 |
| Octet Biosensors: Anti-Human Fc Capture (AHC) | Sartorius (FortéBio) | Cat# 18-5060 |
| Nucleobond Xtra Maxi kit | Macherey-Nagel | Cat# 740414.50 |
| Fast Digest BamHI | Thermo Scientific | Cat# FD0054 |
| Fast Digest Green buffer 10x | Thermo Scientific | Cat# B72 |
| Fast Digest PstI | Thermo Scientific | Cat# FD0614 |
| Fast Digest NotI | Thermo Scientific | Cat# FD0593 |
| Random Hexamer Primers | Thermo Scientific | Cat# SO142 |
| dNTP mix | New England Biolabs | Cat# N0447S |
| HotStarTaq Plus DNA polymerase | Qiagen | Cat# 203603 |
| Biotin protein ligase | GeneCopoeia | Cat# BI001 |
| T5 exonuclease | New England Biolabs | Cat# M0363 |
| Taq DNA ligase | New England Biolabs | Cat# M0208S |
| NAD+ | New England Biolabs | Cat# B9007S |
| Superscript III RTase | Thermo Fischer | Cat# 18080044 |
| Phusion High-Fidelity DNA Polymerase | New England Biolabs | Cat# M0530S |
| Magplex Microspheres | Luminex | Cat# MC10065-01 |
| FreeStyle 293 Expression medium | Thermo Scientific | Cat# 12338018 |
| Ficoll-Paque™ PLUS | Sigma-Aldrich | Cat# GE17-1440-02 |
| DMEM | Gibco | Cat# 11965092 |
| OptiMEM | Gibco | Cat# 31985-070 |
| Iscove's Modified Dulbecco's Medium | Gibco | Cat# 12440053 |
| RPMI 1640 Medium | Gibco | Cat# 11875093 |
| Glutamax supplement | Thermo Scientific | Cat# 35050061 |
| L-Glutamine | Gibco | Cat# 25030149 |
| High-binding plates: Half-area 96-well polystyrene high-binding microplate | Greiner | Cat# 675061 |
| Steritop Filter Units | Merck Millipore | Cat# C3239 |
| QuantiFoil R 2/1 grids (400-mesh) | Thermo Scientific | Cat# 50-190-2583 |
| UltrAuFoil R 1.2/1.3 grids (300-mesh) | Quantifoil Micro Tools GmbH | N/A |
| Glomax reader | Turner BioSystems | Model# 9101-002 |
| Microplate 96 well half area white | Greiner bio-one | Cat# 675074 |
| FACSymphony A1 Cell Analyzer | BD biosciences | N/A |
| FACS-ARIA-SORP | BD biosciences | N/A |
| Greiner CELLSTAR® 96 well plates round bottom clear wells | Merck Millipore | Cat# M9436 |
| Strep-TactinXT Superflow high capacity resin | IBA Life Sciences | Cat# 2-4010-010 |
| NanoDrop 2000C | Thermo Scientific | Cat# ND-2000C |
| Prometheus NT.48 NanoDSF | NanoTemper Technologies | N/A |
| Dynapro Nanostar | Wyatt Technology Corporation | N/A |
| Orbitrap Eclipse mass spectrometer | Thermo Scientific | N/A |
| Ultimate 3000 HPLC | Thermo Scientific | N/A |
| Vitrobot mark IV | Thermo Scientific | N/A |
| Solarus 950 plasma system | Gatan | N/A |
| FEI Titan Krios | Thermo Scientific | N/A |
| K2 Summit direct electron detector camera | Gatan | N/A |
| MAGPIX system | Luminex | Model# MAGPIX-XPON4.1-CEIVD |