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. 2022 Dec 14;30(12):1759–1772.e12. doi: 10.1016/j.chom.2022.10.018
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

19.7E Robinson et al.19 Patent WO2018106712A1
12.1F Robinson et al.19 Patent WO2018106712A1
25.10C Robinson et al.19 Patent WO2018106712A1
37.7H Robinson et al.19 Patent WO2018106712A1
LAVA01 This study N/A
LAVA02 This study N/A
LAVA03 This study N/A
LAVA04 This study N/A
Goat anti-mouse Seracare Cat# 5450-0011
HRP-labeled goat anti-rabbit IgG Jackson Immunoresearch Cat# 111-035-144
HRP-labeled donkey anti-guinea pig IgG Jackson Immunoresearch Cat# 706-035-148
Donkey anti-rabbit IgG-PE Biolegend Cat# 406421
Goat-anti-rabbit IgM-PE Southern Biotech Cat# 4020-09
PE-labeled anti-human CD16 antibody Biolegend Cat# 302008
Fixable Viability Dye eF780 eBioscience Cat# 65-0865-14

Bacterial and virus strains

Lassa virus (Josiah strain) Philipps-University Marburg GenBank: P08669
Guinea-pig adapted Lassa virus (Josiah strain) Safronetz et al.35 GenBank: P08669
NEB 5-alpha Competent E. coli (High Efficiency) New England Biolabs Cat# C2987H

Biological samples

Sera immunized rabbits This study N/A
Sera immunized guinea pigs This study N/A
PBMCs immunized rabbits This study N/A
PBMCs naïve humans Sanquin Blood bank Amsterdam N/A

Chemicals, peptides, and recombinant proteins

I53-50B.4PT1 Walls et al.44 N/A
IL-15 Thermo Scientific Cat# BMS319
Tween20 Sigma-Aldrich Cat# P1379-500ML
Bovine Serum Albumin (fraction V) Thermo Scientific Cat# 9048-46-8
Milk powder PanReac AppliChem Cat# A0830
1% 3,3′,5,5′-tetranethylbenzidine Sigma-Aldrich Cat# 88748
EDTA (Titriplex III) Sigma-Aldrich Cat# 1.08418.1000
Saquinavir NIH-ARP Cat# 4658
DEAE-dextran Sigma-Aldrich Cat# D9885
Mass spectrometry grade trypsin Promega Cat# V5280
Sequencing grade chymotrypsin Promega Cat# V1061
Alpha lytic protease Sigma-Aldrich Cat# A6362
Acetonitrile, 80%, 20% Water with 0.1% Formic Acid, Optima LC/MS Thermo Scientific Cat# 15431423
Water with 0.1% Formic Acid (v/v), Optima™ LC/MS Grade Thermo Scientific Cat# LS118-212
Acetonitrile Thermo Scientific Cat# 10489553
Trifluoroacetic acid Thermo Scientific Cat# 10155347
Dithiothreitol Sigma-Aldrich Cat# 43819
Iodacetamide Sigma-Aldrich Cat# I1149
Phorbol myristate acetate (PMA) Sanbio Cat# P8139-1MG
Urea Sigma-Aldrich U5378-1KG
Glu-C Promega Cat# V1651
BioLock solution IBA Lifesciences Cat# 2-0205-050
Reporter Lysis buffer Promega Cat# E3971
PBS Thermo Scientific Cat# 10010023
TBS Alfa Aesar Cat# J60764.K2
Glutaraldehyde Sigma-Aldrich Cat#
PEI MAX Polysciences Cat# 24765-1
3,3’,5,5’-tetranethylbenzidine Sigma-Aldrich Cat# T4444
Squalene Emulsion adjuvant Polymun Scientific N/A
AEC chromogen Enquire Bioreagents Cat# AB64252
Galanthus Nivalis Lectin Vector Laboratories Cat# L-1240-5
Amersham High Molecular Weight marker Sigma-Aldrich Cat# 17-0445-01
1-Ethyl-3-(3-dimethylaminopropyl) carbodiimide Thermo Scientific Cat# A35391
Sulfo-N-Hydroxysulfosuccinimide Thermo Scientific Cat# A39269
Casein buffer Thermo Scientific Cat# 37528
Penicillin Sigma-Aldrich Cat# P3032-10MI
Streptomycin VWR Cat# 382-EU-100G
Penicillin-Streptomycin (5,000 U/mL) Gibco Cat# 15070063
Gentamicin Corning Cat# 30-005-CR
Fugene Promega Cat# E5911
Carboxymethylcellulose Thermo Scientific Cat# M352-500
Neutral buffered formalin Thermo Scientific Cat# 245-684
Ionomycin Sanbio Cat# 10004974-5
Streptavidin BB515 BD Cat# 564453
Streptavidin AF647 Biolegend Cat# 405237
Streptavidin BV421 Biolegend Cat# 405226
Lauryl maltose neopentyl glycol Anatrace Cat# NG310
Uranyl Formate Electron Microscopy Sciences Cat #D310 25 GM

Critical commercial assays

Bright-Glo Luciferase Assay System Promega Cat# E2620

Deposited data

3D map of GPCysR4(Josiah) from localized reconstruction of GPCysR4(Josiah)-I53-50NP This paper EMDB: EMD-25107
3D model of GPCysR4(Josiah) from localized reconstruction of GPCysR4(Josiah)-I53-50NP This paper PDB: 7SGD
3D map of I53-50NP from focused refinement of GPCysR4(Josiah)-I53-50NP This paper EDMB: EMD-25108
3D model of I53-50NP from focused refinement of GPCysR4(Josiah)-I53-50NP This paper PDB: 7SGE
3D map of GPCysR4(Josiah)-I53-50A.1NT1 in complex with LAVA01 antibody This paper EMDB: EMD-25109
3D model of GPCysR4(Josiah)-I53-50A.1NT1 in complex with LAVA01 antibody This paper PDB: 7SGF

Experimental models: Cell lines

FreeStyle 293F cells Thermo Scientific Cat# R79007
HEK 293T cells ATCC Cat# CRL-11268
Vero cells ATCC Cat# CCL-81
Vero E6 cells ATCC Cat# CRL-i586
TZM-bl cells NIH ARRRP Cat# 8129
THP-1 cells ATCC Cat# TIB-202

Experimental models: Organisms/strains

New Zealand White rabbits Covance Research Products, Inc N/A
Hartley Guinea Pigs UTMB N/A

Recombinant DNA

GPCysR4(Josiah)-StreptagII pPPI4 plasmid This study N/A
GPCysR4(Josiah)-I53-50A.1NT1-Strep-tagII pPPI4 plasmid This study N/A
GPCysR4(Josiah)-I53-dn5B-StreptagII pPPI4 plasmid This study N/A
GPCysR4(Josiah)-I53-50A.1NT1-Avi-His pPPI4 plasmid This study N/A
GPCysR4(NIG08-A41)-I53-50A.1NT1-Avi-His pPPI4 plasmid This study N/A
Furin pPPI4 plasmid Brouwer et al.29 N/A
Fc-tagged LAMP-1 ectodomain Jae et al.15 N/A
19.7E HC, 19.7E LC, 12.1F HC, 12.1F LC, 25.10C HC, 25.10C LC, 37.7H HC, 37.7H LC gene fragments Integrated DNA Technologies N/A

Software and algorithms

Dynamics Wyatt Technology Corporation N/A
ByosTM (Version 4.0) Protein Metrics Inc. https://www.proteinmetrics.com/products/byonic/
GraphPad Prism v8 GraphPad N/A
XCalibur Version v4.2 Thermo Scientific N/A
Orbitrap Fusion Tune application v3.1 Thermo Scientific N/A
FlowJo v.10.7.1 Flowjo N/A
UCSF ChimeraX Goddard et al.45 N/A
cryoSPARC.v2 Punjani et al.46 N/A
Leginon Suloway et al.47 N/A
MotionCor2 Zheng et al.48 N/A
GCTF Zhang49 N/A
Relion/3.0 Zivanov et al.50 N/A
Localized Reconstruction v1.2.0 Ilca et al.51 N/A
AbodyBuilder Leem et al.52 N/A
Coot Casañal et al.53 N/A
EMRinger Barad et al.54 N/A
MolProbity Williams et al.55 N/A
Appion Lander et al.56 N/A

Other

EasySpray PepMap RSLC C18 column
(75 μm x 75 cm)
Thermo Scientific Cat# ES805
Fetal bovine serum R&D Biosystems Cat# S11150H
Fetal calf serum Gibco Cat# 10270/106
C18 ZipTip Merck Milipore Cat# ZTC18S008
Immobilized papain resin Thermo Scientific Cat# 20341
Protein A resin Thermo Scientific Cat# 20333
CD56 MicroBeads, human Miltenyi Biotec Cat# 130-050-401
CaptureSelect IgG-Fc resin Thermo Scientific Cat# 2942852010
FluoSpheres NeutrAvidin-Labeled Microspheres Thermo Scientific Cat# F8776
Vivaspin 6, 10.000 Da MWCO, polyethersulfone Sigma-Aldrich Cat# GE28-9322-96
Vivaspin 20, 50.000 Da MWCO, polyethersulfone Sigma-Aldrich Cat# GE28-9323-62
Vivaspin 500, 3.000 Da MWCO, polyethersulfone Sigma-Aldrich Cat# GE28-9322-18
Amicon 15, 10.000 Da MWCO, cellulose Sigma-Aldrich Cat# UFC901024
Slide-A-Lyzer Mini dialysis device 10 kDa MWCO Thermo Scientific Cat# 88401
PepMap100 C18 3UM 75UMx2CM Nanoviper Thermo Scientific Cat# 164946
Ni-NTA agarose QIAGEN Cat# 30210
Novex Wedgewell 10-20% Tris-Glycine gels Thermo Scientific Cat# XP10202BOX
NuPAGE 4-12% Bis-Tris gels Thermo Scientific Cat# NP0321BOX
Superose 6 increase 10/300 GL Sigma-Aldrich Cat# GE29-0915-96
HiLoad 16/600 Superdex pg200 Sigma-Aldrich Cat# GE28-9893-35
Econo-column chromatography columns BIO RAD Cat# 7371512
NGC chromatography system BIO RAD N/A
Octet K2 system Sartorius (FortéBio) N/A
Octet Biosensors: Streptavidin Sartorius (FortéBio) Cat# 18-5019
Octet Biosensors: Protein A Sartorius (FortéBio) Cat# 18-5010
Octet Biosensors: Anti-Human Fc Capture (AHC) Sartorius (FortéBio) Cat# 18-5060
Nucleobond Xtra Maxi kit Macherey-Nagel Cat# 740414.50
Fast Digest BamHI Thermo Scientific Cat# FD0054
Fast Digest Green buffer 10x Thermo Scientific Cat# B72
Fast Digest PstI Thermo Scientific Cat# FD0614
Fast Digest NotI Thermo Scientific Cat# FD0593
Random Hexamer Primers Thermo Scientific Cat# SO142
dNTP mix New England Biolabs Cat# N0447S
HotStarTaq Plus DNA polymerase Qiagen Cat# 203603
Biotin protein ligase GeneCopoeia Cat# BI001
T5 exonuclease New England Biolabs Cat# M0363
Taq DNA ligase New England Biolabs Cat# M0208S
NAD+ New England Biolabs Cat# B9007S
Superscript III RTase Thermo Fischer Cat# 18080044
Phusion High-Fidelity DNA Polymerase New England Biolabs Cat# M0530S
Magplex Microspheres Luminex Cat# MC10065-01
FreeStyle 293 Expression medium Thermo Scientific Cat# 12338018
Ficoll-Paque™ PLUS Sigma-Aldrich Cat# GE17-1440-02
DMEM Gibco Cat# 11965092
OptiMEM Gibco Cat# 31985-070
Iscove's Modified Dulbecco's Medium Gibco Cat# 12440053
RPMI 1640 Medium Gibco Cat# 11875093
Glutamax supplement Thermo Scientific Cat# 35050061
L-Glutamine Gibco Cat# 25030149
High-binding plates: Half-area 96-well polystyrene high-binding microplate Greiner Cat# 675061
Steritop Filter Units Merck Millipore Cat# C3239
QuantiFoil R 2/1 grids (400-mesh) Thermo Scientific Cat# 50-190-2583
UltrAuFoil R 1.2/1.3 grids (300-mesh) Quantifoil Micro Tools GmbH N/A
Glomax reader Turner BioSystems Model# 9101-002
Microplate 96 well half area white Greiner bio-one Cat# 675074
FACSymphony A1 Cell Analyzer BD biosciences N/A
FACS-ARIA-SORP BD biosciences N/A
Greiner CELLSTAR® 96 well plates round bottom clear wells Merck Millipore Cat# M9436
Strep-TactinXT Superflow high capacity resin IBA Life Sciences Cat# 2-4010-010
NanoDrop 2000C Thermo Scientific Cat# ND-2000C
Prometheus NT.48 NanoDSF NanoTemper Technologies N/A
Dynapro Nanostar Wyatt Technology Corporation N/A
Orbitrap Eclipse mass spectrometer Thermo Scientific N/A
Ultimate 3000 HPLC Thermo Scientific N/A
Vitrobot mark IV Thermo Scientific N/A
Solarus 950 plasma system Gatan N/A
FEI Titan Krios Thermo Scientific N/A
K2 Summit direct electron detector camera Gatan N/A
MAGPIX system Luminex Model# MAGPIX-XPON4.1-CEIVD