Deposited data |
|
Summary statistics, PAN-UK BioBank |
Pan-UKB team. https://pan.ukbb.broadinstitute.org. 2020 |
https://pan.ukbb.broadinstitute.org/ |
TOPMed data, by study |
Taliun et al.31
|
Amish: phs000956, ARIC: phs001211, CARDIA: phs001612, CHS: phs001368, FHS: phs000974, HCHS_SOL: phs001395, JHS: phs000964, MESA: phs001416 |
|
Software and algorithms |
|
All original computer code |
This paper |
https://github.com/tamartsi/HE_Genetic_Correlation |
Principal Components, kinship matrices, unrelated individuals |
This paper |
TOPMed DCC pipeline https://github.com/UW-GAC/analysis_pipeline
|
GCTA |
Yang et al.57
|
https://yanglab.westlake.edu.cn/software/gcta/#Overview |
R package: igraph |
Csardi et al.58
|
https://igraph.org/r/ |
R package: qgraph |
Epskamp et al.59
|
https://cran.r-project.org/web/packages/qgraph/index.html |
R package: corrplot |
Friendly60
|
https://cran.r-project.org/web/packages/corrplot/vignettes/corrplot-intro.html |
ldsc package |
Bulik-Sullivan28
|
https://github.com/bulik/ldsc |
cov-LDSC |
Luo34
|
https://github.com/immunogenomics/cov-ldsc |