TABLE 2.
Diversity of salmonella isolates | Number of batches with | Total number of batches where ≥2 isolates a | % of batches with two or more isolates typed for each diversity level indicated | |||
---|---|---|---|---|---|---|
2 isolates | 3 isolates | 4 isolates | 5 isolates | |||
0–5 SNPs (same serovar) | 18 | 3 | 7 | 6 | 34 | 59.6 |
6–25 SNPs (same serovar) | 3 | 1 | 0 | 0 | 4 | 7.0 |
>25 SNPs (same serovar) | 3 | 5 | 5 | 1 | 14 | 24.6 |
2 or more serovars | 4 | 0 | 1 | 0 | 5 | 8.8 |
Total | 29 | 9 | 13 | 7 | 57 | 100 |
Abbreviations: NA, not applicable; SNP, single nucleotide polymorphism; SLC, single linkage cluster.
In total, isolates from 116 batches were analysed where 57 batches had two or more isolates with SNP typing available.