Fig. 3.

The ViMRT user interface and the usage guidance locally. Multiple clearly delimited zones allow users to perform search and visualize results, which include: (a) A query entity can be inputted on the home page, such as a virus mutation, virus gene or related disease. (b) The match query includes the detailed information of virus mutations, virus genes, and related diseases, sorted by the publication year in a descending order. (c) The co-occurrence correlation of viral mutation and related disease. The table shows co-occurrence score of mutation which have co-occurred in the same sentence with one disease by Fisher's test in each virus (***P < 0.001; **P < 0.01; *P < 0.05; ns, not significant). The histogram chart shows the co-occurrence correlation score of mutation and disease ranking top 10. (d) The user can select the entities menu to get sentence co-occurrence of different entities. (e) Users can also filter publications based on ‘Year’, ‘Position’ and ‘PMID’ of publication matching the query. (f) Users can download mutation data on the ‘Dataset’ page and view the usage of ViMRT in the ‘Docs’ page with a detailed script