Table 4.
Benchmarking 673 crAss-like metagenome assembled phage genomes (Yutin et al., 2021)
| Pharokka PHANOTATE meta mode | Pharokka Prodigal meta mode | Prokka with PHROGs | |
|---|---|---|---|
| Time (min) | 106.55 | 11.88 | 252.33 |
| Time gene prediction (min) | 96.21 | 3.4 | 5.12 |
| Time tRNA prediction (min) | 1.25 | 1.08 | 0.30 |
| Time database searches (min) | 6.75 | 5.58 | 238.77 |
| CDS | 138 628 | 90 497 | 89 802 |
| contig min coding density (%) | 66.01 | 46.18 | 46.13 |
| Contig max coding density (%) | 98.86 | 97.85 | 97.07 |
| Annotated function CDS | 9341 | 9228 | 14 461 |
| Unknown function CDS | 129 287 | 81 269 | 75 341 |