Table 2.
Variance in graph properties across genome input order permutations
| Method | μ.bp | σ.bp | μ.node | σ.node | μ.edge | σ.edge |
|---|---|---|---|---|---|---|
| minigraph | 648 967 | 8112 | 190 | 11.6 | 267 | 15.9 |
| seqwish.mm2 | 609 039 | 4.08 | 30 692 | 2.89 | 41 723 | 6.32 |
| seqwish.wfm | 683 470 | 0 | 28 756 | 0 | 39 080 | 0 |
| twopaco.k19 | 1 270 115 | 0 | 26 383 | 0 | 35 284 | 0 |
Notes: We report the mean (μ) and variance in standard deviations (σ) for graph length (bp), node count (node) and edge count (edge). We show results from minigraph, TwoPacCo with k = 19 (twopaco.k19), seqwish using minimap2 alignments (seqwish.mm2) and seqwish using wfmash alignments (seqwish.wfm).