. 2001 Mar;69(3):1625–1629. doi: 10.1128/IAI.69.3.1625-1629.2001

TABLE 1.

Primers used to study the cag PAI structure

Amplified area (reference)	Primer names	Sequence (5′→3′)
cagA (27)	F1	`GATAACAGCCAAGCTTTTGAGG`
	B1	`CTGCAAAAGATTGTTTGGCAGA`
picB	picB/AF	`GGCTTTATCAAAGAATGGAGCGAGCG`
	picB/AR	`TACTCAATAGCTCTTCTATGAGC`
	picB/BF	`GTGGAGGCTCTAAAGAGCAGGGC`
	picB/BR	`TGACATACTCCCCACCCATTGCG`
cag13-cag14	cag13F	`CAATAGTGGGAGCTTAGTGCC`
	cag14R	`GCGATTGGTGGCTACTTATCGC`
virD4	virD4AF	`TTTATGATGATAATCGATCGCC`
	virD4AR	`GAACGCCTGCCCTGCGTAAGCG`
	virD4BF	`TTTCATAGGTTCTATGGCAAGCGGG`
	virD4BR	`TTAGCGCCATTCCTACCATAACC`
cag empty site (19)	Luni1	`ACATTTTGGCTAAATAAACGCTG`
	5280	`GGTTGCACGCATTTTCCCTTAATC`
IS605 TnpA	605AF	`CGCCTTGATCGTTTCAGGATTAGC`
	605AR	`CAACCAACCGAAGCAAGCATAATC`
IS605 TnpB	605BF	`GGCTGTTCTAGGGTCGTGTATAAC`
	605BR	`CAAGCTAGATGATGCAATCTAGCTACC`
Full IS605 (18)	ORF18F	`CGCCTTGATCGTTTCAGGATTAGC`
	ORF19R	`CAAGCTAGATGCAATCTAGCTACC`
cagII	cag1F	`TGTTGTGTCTTGAGCGGTGC`
	cag9R	`GGCGATGGTCTCTTTTATCGCC`
Middle zone	cag9F	`GGCGATAAAAGAGACCATCGCC`
	cag18R2	`GCTGAGCAATGCGGAATAT`
cagI	cag18F2	`ATATTCCGCATTGTTGCTCAGC`
	cag26R	`GCTTGCCTGTTATCCCTATCG`