Antibodies |
Cytochrome C |
Invitrogen |
Cat# MA5-11823; RRID: AB_10987059 |
COX-IV |
Abcam |
Cat# ab33985; RRID: AB_879754 |
PDHA1 (phospho S293) |
Abcam |
Cat# ab92696; RRID: AB_10711672 |
KGA/GAC |
Proteintech |
Cat# 12855-1-AP; RRID: AB_2110381 |
Phospho-Histone H2A.X (Ser139) |
Cell Signaling |
Cat# 9718; RRID: AB_2118009 |
Tomm20 |
Abcam |
Cat# ab186735; RRID: AB_2889972 |
Cytokeratin 14 |
Invitrogen |
Cat# PA5-32460; RRID: AB_2549929 |
Laminin |
Abcam |
Cat# ab11575; RRID: AB_298179 |
Goat anti-Rabbit IgG (H+L) Cross-Adsorbed Secondary Antibody, Alexa Fluor 488 |
Invitrogen |
Cat# A11008; RRID: AB_143165 |
Goat anti-Rabbit IgG (H+L) Cross-Adsorbed Secondary Antibody, Alexa Fluor 594 |
Invitrogen |
Cat# A11012; RRID: AB_2534079 |
Goat anti-mouse IgG (H+L) Cross-Adsorbed Secondary Antibody, Alexa Fluor 488 |
Invitrogen |
Cat# A11001; RRID: AB_2534069 |
Goat anti-mouse IgG (H+L) Cross-Adsorbed Secondary Antibody, Alexa Fluor 594 |
Invitrogen |
Cat# A11005; RRID: AB_2534073 |
SAPK/JNK |
Cell Signaling |
Cat# 9252; RRID: AB_2250373 |
Phospho-SAPK/JNK (Thr183/Tyr185) |
Cell Signaling |
Cat# 9255; RRID: AB_2307321 |
P38 MAPK |
Cell Signaling |
Cat# 8690; RRID: AB_10999090 |
Phospho-p38 MAPK (Thr180/Tyr182) |
Cell Signaling |
Cat# 4511; RRID: AB_2139682 |
P44/42 MAPK (Erk1/2) |
Cell Signaling |
Cat# 4695; RRID: AB_390779 |
Phospho-p44/42 MAPK (Erk1/2) (Thr202/Tyr204) |
Cell Signaling |
Cat# 4370; RRID: AB_2315112 |
JNK1 |
Santa Cruz Biotechnology |
Cat# sc-1648; RRID: AB_675868 |
JNK2 |
Cell Signaling |
Cat# 9258; RRID: AB_2141027 |
NANOG |
R&D Systems |
Cat# AF1997; RRID: AB_355097 |
GAPDH |
Cell Signaling |
Cat# 5174; RRID: AB_10622025 |
Anti-rabbit IgG HRP linked |
Cell Signaling |
Cat# 7074; RRID: AB_2099233 |
Anti-mouse IgG HRP linked |
Cell Signaling |
Cat# 7076; RRID: AB_330924 |
Antibody dilutions and application, see Table S2
|
|
|
Biological samples |
Heart and skin tissues from aged mice (19–24 months) or young mice (4 months) of mixed genders (C57BL/6 strain) |
National Institute on Aging |
N/A |
Chemicals, peptides, and recombinant proteins |
Mitotracker Red |
Invitrogen |
Cat# M7512 |
DCFDA/H2DCFDA-Cellular ROS Assay Kit |
Abcam |
Cat# ab113851 |
2-NBDG |
Invitrogen |
Cat# N13195 |
SYBR green PCR mix |
Applied Biosystems |
Cat# 4309155 |
Antimycin |
Sigma |
Cat# A8674 |
Rotenone |
Sigma |
Cat# R8875 |
Oligomycin |
Sigma |
Cat# O4876 |
TMPD |
Sigma |
Cat# 87890 |
Succinate |
Sigma |
Cat# S9512 |
L-Ascorbic Acid |
Fisher Scientific |
Cat# A61100
|
Sodium Azide |
Sigma |
Cat# S8032 |
2-DG |
Sigma |
Cat# D8375 |
Glucose |
Agilent technologies |
Cat# 103577-100 |
Pyruvate |
Agilent technologies |
Cat# 103578-100 |
Glutamine |
Agilent technologies |
Cat# 103579-100 |
Seahorse XF DMEM Medium |
Agilent technologies |
Cat# 103575-100 |
Seahorse XFe96 FluxPak |
Agilent technologies |
Cat# 102416-100 |
CB-839 (GLS inhibitor) |
Selleckchem |
Cat# S7655 |
BPTES (GLS inhibitor) |
Selleckchem |
Cat# S7753 |
Corn Oil |
Selleckchem |
Cat# S6701 |
M.O.M Immunodetection kit |
Vector Laboratories |
Cat# BMK-2202 |
Hoechst 33342 |
Invitrogen |
Cat# 62249 |
Critical commercial assays |
Luminescent ATP detection Assay Kit |
Abcam |
Cat# ab113849 |
Lactate-Glo Assay |
Promega |
Cat# J5021 |
Glutamate Assay Kit |
Abcam |
Cat# ab83389 |
Alpha Ketoglutarate Assay Kit |
Abcam |
Cat# ab83431 |
PicoProbe Glutaminase Assay Kit |
Biovision |
Cat# K455-100 |
Pyruvate Assay Kit |
Abcam |
Cat# ab65342 |
Ammonia Assay Kit |
Abcam |
Cat# ab83360 |
Urea Assay Kit |
Abcam |
Cat# ab83362 |
DCF ROS/RNS Assay Kit |
Abcam |
Cat# ab238535 |
Senescence Detection Kit |
Abcam |
Cat# ab65351 |
Experimental models: Cell lines |
Human: Mesenchymal stem cells isolated from hair follicle |
Bajpai et al.60
|
N/A |
Human: dermal fibroblasts from patients suffering from Hutchison-Gilford Progeria Syndrome with classic mutation |
The Progeria Research Foundation |
HGADFN167 |
Human: dermal fibroblasts from father of HGPS patient without mutation |
The Progeria Research Foundation |
HGADFN168 |
Experimental models: Organisms/strains |
Mouse: LAKI (C57BL/6, LmnaG609G/+) |
Provided by Dr. Dudley Lamming |
N/A |
Oligonucleotides |
shRNA targeting human SLC14A1 GGGCTCTGAGTATATAACTGT |
This paper |
N/A |
shRNA targeting human JNK1 GGGCCTACAGAGAGCTAGTTCTTAT |
You et al.61
|
N/A |
shRNA targeting human JNK2 GCCAACTGTGAGGAATTATGTCGAA |
You et al.61
|
N/A |
shRNA targeting human GLS1_1 GGAGCAATTGTTGTGACTTCA |
This paper |
N/A |
shRNA targeting human GLS1_2 GCATTCCTGTGGCATGTATGA |
This paper |
N/A |
Primers for qPCR, see Table S1
|
N/A |
N/A |
Software and algorithms |
Graphpad Prism 8 |
Graphpad |
https://www.graphpad.com/
|
ImageJ |
NIH |
https://imagej.nih.gov/ij/
|
Biorender |
Biorender |
https://biorender.com/
|
Zen 3.0 (blue edition) |
Carl Zeiss |
https://www.zeiss.com/microscopy/en/products/software/zeiss-zen.html
|
Microsoft Publisher |
Microsoft |
N/A |
Seahorse Wave Desktop |
Agilent technologies |
https://www.agilent.com/en/product/cell-analysis/real-time-cell-metabolic-analysis/xf-software/seahorse-wave-desktop-software-740897
|