Table 1.

Identification of Atg18 interactors with the BioID approach.

Gene	Replicate	Intensity			Ratio				Enrichment
		light (BirA*-Atg18)	medium (BirA*)	heavy (empty)	light/ medium		light/ heavy		light/ medium		light/ heavy
Atg18	1	2,783,100,000	225,250,000	99,951,000	12.36	12	27.84	79	92%	91%	96%	97%
	2	4,149,700,000	464,070,000	212,590,000	8.94		19.52		89%		95%
	3	2,996,400,000	191,760,000	15,710,000	15.63		190.73		94%		99%
Vac14	1	19,347,000	480,700	751,380	40.25	32	25.75	100	98%	94%	96%	98%
	2	22,695,000	464,110	95,253	48.90		238.26		98%		100%
	3	38,807,000	5,002,400	1,087,700	7.76		35.68		87%		97%
Fab1	1	-	-	-		n.a. (6)	-	n.a. (156)	-	91%	-	100%
	2	982,570	0	0	n.a.		n.a.		100%		100%
	3	1,895,500	323,500	12,140	5.86		156.14		83%		99%
Atg2	1	2,221,700	108,290	51,979	20.52	n.a. (21)	42.74	n.a. (43)	95%	98%	98%	99%
	2	1,452,800	0	0	n.a.		n.a.		100%		100%
	3	1,966,800	0	0	n.a.		n.a.		100%		100%
Vps35	1	4,604,000	790,540	96,105	5.82	9	47.91	n.a. (48)	83%	88%	98%	99%
	2	14,455,000	1,298,800	0	11.13		n.a.		91%		100%
	3	9,986,000	906,900	0	11.01		n.a.		91%		100%
Snx3	1	1,411,000	0	0	n.a.	n.a. (6)	n.a.	n.a. (76)	100%	85%	100%	100%
	2	1,844,400	611,410	24,183	3.02		76.27		67%		99%
	3	2,603,300	320,970	0	8.11		n.a.		88%		100%

$$\mathrm{E}\mathrm{n}\mathrm{r}\mathrm{i}\mathrm{c}\mathrm{h}\mathrm{m}\mathrm{e}\mathrm{n}\mathrm{t}=\frac{\mathrm{i}\mathrm{n}\mathrm{t}\mathrm{e}\mathrm{n}\mathrm{s}\mathrm{i}\mathrm{t}\mathrm{y}(\mathrm{l}\mathrm{i}\mathrm{g}\mathrm{h}\mathrm{t})-\mathrm{i}\mathrm{n}\mathrm{t}\mathrm{e}\mathrm{n}\mathrm{s}\mathrm{i}\mathrm{t}\mathrm{y}(\mathrm{m}\mathrm{e}\mathrm{d}\mathrm{i}\mathrm{u}\mathrm{m}\mathrm{o}\mathrm{r}\mathrm{h}\mathrm{e}\mathrm{a}\mathrm{v}\mathrm{y})}{\mathrm{i}\mathrm{n}\mathrm{t}\mathrm{e}\mathrm{n}\mathrm{s}\mathrm{i}\mathrm{t}\mathrm{y}(\mathrm{l}\mathrm{i}\mathrm{g}\mathrm{h}\mathrm{t})}\times 100\mathrm{\%}$$