Table 3.

AIC-c Scores and LRT results for single-stranded DNA datasets. The lowest AIC-c scores indicating the best fitting models are in bold.

Virus Family	Dataset	AIC Score GTR	AIC Score NREV-6	AIC Score NREV-12	P-Value GTR vs NREV-12	P-Value NREV-6 vs NREV-12	DNR
Nanoviridae	BBTV M	15044.3	15207.9	14984.4	<0.001	<0.001	0.662
	BBTV N	10605.6	10686.2	10595.2	<0.001	<0.001	0.533
	BBTV R	18484.5	18544	18480.8	>0.05	<0.001	0.609
	BBTV S	12718.9	12757.2	12707.3	<0.001	<0.001	0.728
	CCDV	38622.7	38632.0	38630.5	>0.05	0.03	0.050
	MDV	36232.8	36063	36064	<0.001	>0.05	0.142
	PYDV	56138.4	56076.6	56056.4	<0.001	<0.001	0.187
	FBNS	100153.6	100135.6	100120.5	<0.001	<0.001	0.098
Geminiviridae	Begomo 5	28192.1	28311.9	28192.5	>0.05	<0.001	0.1995
	Begomo 6	16743.0	16722.6	16724.1	<0.001	>0.05	0.214
	Begomo 9	8517.6	8540.8	8515.6	0.03	<0.001	0.312
	Dicot 1	44730.7	44594.3	44583.3	<0.001	<0.001	0.200
	Dicot 2	39909.9	39919.8	39917.9	>0.05	<0.001	0.100
	MSV	252645.3	254347.5	254347.5	<0.001	<0.001	0.144
	PanSV	94601.2	94600.3	94593.7	<0.001	<0.001	0.182
	WDV	35301.7	35313.2	35253.8	<0.001	<0.001	0.1033
Circoviridae	BFDV	17256.7	17262.7	17246.7	<0.001	<0.001	0.224
	DG_CV	12754.8	12779.5	12758.3	>0.05	<0.001	0.116
	PiCV	19180.5	19192.5	19191.0	>0.05	0.04	0.117
	CCCC	84435.7	84377.4	84315.3	<0.001	<0.001	0.132
	BTC	262910.4	262060.1	261985.4	<0.001	<0.001	0.178
	POCV2	24940.9	24953.8	24915.8	<0.001	<0.001	0.162
	CCV	90307.9	90301.5	90285.9	<0.001	<0.001	0.114
Anelloviridae	TTV_1	825811	826800	825292	<0.001	<0.001	0.513
	TTSV	332287.9	332397.4	332258.2	<0.001	<0.001	1.560
Parvoviridae	MVM	26756.3	26743.9	26686.9	<0.001	<0.001	0.148
	HPV	67051.2	67080.1	67001.8	<0.001	<0.001	0.235
	CPV	85731	85695	85689.3	<0.001	0.007	0.062
	PPV	163006.8	163090.7	162995.9	<0.001	<0.001	0.143
	CAV_P	37073.3	37115.5	37065.7	<0.001	<0.001	0.162
Microviridae	BMV	31175.3	31164.8	31147.3	<0.001	<0.001	0.188
Pleolipoviridae	APV	85700.2	85617.4	85402.8	<0.001	<0.001	0.204
	BPV	204797.5	204802.3	204796.7	0.04	0.007	0.064