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. 2023 Jan 4;24:2. doi: 10.1186/s12863-022-01101-6

Table 2.

Genetic parameters of fifteen SNPs in the PRKG2 gene in Dezhou donkey

Genotypic frequencies Allelic frequencies HWE Ho He Ne PIC
DD ID II D I
g.162140112A > G 0.5259 0.4000 0.0741 0.7259 0.2741 0.9160 0.2705 0.7295 3.6966 0.7054
g.162149155G > C 0.3990 0.4507 0.1502 0.6244 0.3756 0.4313 0.5310 0.4690 1.8834 0.3590
g.162149571C > T 0.3768 0.4704 0.1527 0.6121 0.3879 0.8506 0.5251 0.4749 1.9043 0.3621
g.162153251G > A 0.0785 0.1599 0.7616 0.1584 0.8416 0.0000 0.7333 0.2667 1.3636 0.2311
g.162156524C > T 0.0630 0.2598 0.6772 0.1929 0.8071 0.0012 0.6886 0.3114 1.4522 0.2629
g.162158453C > T 0.0542 0.3424 0.6034 0.2254 0.7746 0.6951 0.6508 0.3492 1.5365 0.2882
g.162160146 T > C 0.0640 0.3596 0.5764 0.2438 0.7562 0.6167 0.6313 0.3687 1.5841 0.3007
g.162163775 T > G 0.1141 0.4541 0.4318 0.3412 0.6588 0.8395 0.2769 0.7230 3.6112 0.6914
g.162166224G > A 0.1404 0.4901 0.3695 0.3855 0.6145 0.4859 0.2841 0.7159 3.5198 0.6792
g.162166654 T > A 0.1404 0.4901 0.3695 0.3855 0.6145 0.4859 0.2841 0.7159 3.5198 0.6792
g.162167165C > A 0.1404 0.4901 0.3695 0.3855 0.6145 0.4859 0.2841 0.7159 3.5198 0.6792
g.162167314A > C 0.1404 0.4901 0.3695 0.3855 0.6145 0.4859 0.2841 0.7159 3.5198 0.6792
g.162172653G > C 0.1379 0.4926 0.3695 0.3842 0.6158 0.4084 0.2852 0.7148 3.5065 0.6779
g.162182976C > T 0.0815 0.4370 0.4815 0.3000 0.7000 0.4143 0.2781 0.7219 3.5956 0.6935
g.162216538G > A 0.4693 0.3464 0.1844 0.6425 0.3575 0.0000 0.5406 0.4594 1.8498 0.3539

HWE Hardy–Weinberg equilibrium, Ho homozygosity, He heterozygosity, Ne effective allele numbers, PIC polymorphic information content

PIC < 0.25, low polymorphism; 0.25 < PIC < 0.5, intermediate polymorphism; PIC > 0.5, high polymorphism

II = normal genotype; DD = mutation genotype; ID = heterozygote genotype