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. Author manuscript; available in PMC: 2023 Jan 4.
Published in final edited form as: Nat Methods. 2022 Mar 31;19(6):687–695. doi: 10.1038/s41592-022-01440-3

Extended Data Fig. 1 |. Sequencing biases observed in missing k-mers.

Extended Data Fig. 1 |

a, missing k-mers with its GA composition. b-d, v0.9 assembly and k-mer copy number spectrum from HiFi, Illumina, and hybrid k-mer sets (left) and per-chromosome missing (likely error) k-mer counts from the HiFi derived consensus or patches (right). Most missing k-mers in HiFi overlapped sequences from patched regions. No missing k-mer was found on chromosomes indicated with red arrows.