Table 1. K-mer based consensus quality evaluation.
From each sequencing dataset and assembly versions, 21-mers were collected and compared with Merqury36.
| PacBio HiFi | Illumina | Hybrid | |
|---|---|---|---|
| QV | |||
| v0.9 | 69.68 | 66.09 | 70.22 |
| v1.0 | 69.88 | 67.28 | 72.62 |
| v1.1 | 69.80 | 67.86 | 73.94 |
| K-mers found only in assembly (Error k-mers) | |||
| v0.9 | 6,881 | 15,723 | 6,073 |
| v1.0 | 6,581 | 11,961 | 3,496 |
| v1.1 | 6,724 | 10,497 | 2,591 |
| K-mers found in both assembly and reads | |||
| v0.9 | 3,045,438,411 | 3,045,438,411 | 3,045,438,411 |
| v1.0 | 3,045,440,942 | 3,045,440,942 | 3,045,440,942 |