Table 1.
Primer ID No. | SNP/db SNP ID | Region | Primers (5′—3′) | Tm | Flanking sequences |
---|---|---|---|---|---|
1 | −2548A/G rs7799039 | Promoter-1 | F-TGGGCATCCCCACAGACGGA | 75.4 | AGGGTTGC[A/G]CTGATCCT |
R-TCACAGTGGTCCTGAGGTGACG | 69.9 | ||||
| |||||
2 | −633C/T rs28954080 | 5′-UTR | F-CACGCCTGGCTGGGTTGGTT | 73.5 | CCAGAGAG[C/T]GTGCACTC |
R-TGCGGGGTTGGGGGTTCTGA | 75.9 | ||||
| |||||
3 | −188C/A rs791620 | Exon-1 | F-TCGCTCCTACCAGCCACCCC | 72.7 | GCTCCTGG[A/C]GCGCCGAG |
R-GTCCTGCCTTCTGGGCACCG | 73.4 | ||||
| |||||
3 | +19G/A rs2167270 | Exon-1 | F-TCGCTCCTACCAGCCACCCC | 72.7 | CAGCGCCA[A/G]CGGTTGCA |
R-GTCCTGCCTTCTGGGCACCG | 73.4 | ||||
| |||||
4 | +45G/A rs145044661 | Exon-2 | F-TGAGGGGATGGTAGCCAGAGCA | 72.0 | TCAATGAC[A/G]TTTCACAC |
R-TCAGCAGGCAGAGGGGCCAA | 74.6 | ||||
| |||||
5 | +102C/T rs28954113 | Exon-3 | F-GGCTCCACCCCATCCTGACCT | 72.6 | CTGGAGAA[A/C/G/T]CTCCGGGAT |
R-TGCTGGGTGGACCCCCTTCC | 74.6 | ||||
| |||||
5 | +144A/G rs1800564 | Exon-3 | F-GGCTCCACCCCATCCTGACCT | 72.6 | CTTCTTCAC[A/G/T]TGCTGGCC |
R-TGCTGGGTGGACCCCCTTCC | 74.6 | ||||
| |||||
5 | +328G/A rs28954114 | Exon-3 | F-GGCTCCACCCCATCCTGACCT | 72.6 | AGGACTAC[A/G]TTAAGGGA |
R-TGCTGGGTGGACCCCCTTCC | 74.6 |