Table 1.
Primers used in this study for real-time PCR.
| Target gene | Sequence (5’-3’) | Product size | Reference |
|---|---|---|---|
| tcdA | 5’ CAGGGCTAATAGTTTGTTTACAGAACA 3’ 5’ CAACATCTAAATATACTCCGCCAAAA 3’ |
143 | Wroblewski et al., 2009 |
| tcdB | 5’ AGCAGTTGAATATAGTGGTTTAGTTAGAGTTG 3’ 5’ CATGCTTTTTTAGTTTCTGGATTGAA 3’ |
144 | Wroblewski et al., 2009 |
| tcdC | 5’ GGTCATAAGTAATACCAGTATCATATCC 3’ 5’ TGAAAGACGACGAAAAGAAAGC 3’ |
150 | Wroblewski et al., 2009 |
| cdtA | 5’ GATCTGGTCCTCAAGAATTTGGTT 3’ 5’ GCTTGTCCTTCCCATTTTCGATT 3’ |
103 | Wroblewski et al., 2009 |
| cdtB | 5’ AAAAGCTTCAGGTTCTTTTGACAAG 3’ 5’ TGATCAGTAGAGGCATGTTCATTTG 3’ |
132 | Wroblewski et al., 2009 |
| spo0A | 5’ AGCGCAATAAATCTAGGAGCA 3’ 5’AGGTTTTGGCTCAACTTGTGT 3’ |
117 | Aldape et al., 2015 |
| slpA | 5’ AATGATAAAGCATTTGTAGTTGGTG 3’ 5’ TATTGGAGTAGCATCTCCATC 3’ |
126 | Denève et al., 2009 |
| cwp66 | 5′ GACGACGACAAGATAGTTACTCAAATTGGTGGC 3′ 5′ GACGACGACAAGATAGTTACTCAAATTGGTGGC 3’ |
900 | Shirvan and Aitken, 2016 |
| cwp84 | 5’ TGGGCAACTGGTGGAAAATA 3′ 5’ TAGTTGCACCTTGTGCCTCA 3’ |
151 | Denève et al., 2009 |
| 16S rRNA | 5’ AGCGGTGAAATGCGTAGATAT 3’ 5’ CAGCGTCAGTTACAGTCCAGA 3’ |
72 | Aldape et al., 2015 |