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. 2023 Jan 5;8(1):40–54. doi: 10.1038/s41564-022-01284-9

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© The Author(s) 2023

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 1 — Concatenated (74 marker genes) Bayesian phylogeny of 180 PVC bacteria with compositionally heterogeneous sites removed (8,151 amino acid sites). Circles indicate bipartition support from posterior probability (P) (CAT + GTR + Γ4 model), and nonparametric bootstraps (BP) (LG + C60 + F + Γ4-derived PMSF approximation). The tree is rooted by Planctomycetes. Reduced branch lengths are indicated by parallel lines, and substitutions per site by the scale bar. Genome type, evidence for host association and the environment from which the genome was obtained are indicated by coloured squares according to the legend. Genome size (Mbp in purple) and GC content (%GC in dark blue and %AT in light blue) are indicated by bars. Higher-level taxonomic classifications are indicated and chlamydial families outlined by coloured boxes. See also Supplementary Data 2 for genome characteristics and Supplementary Data 6 for the uncollapsed species phylogeny.