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. 2023 Jan 6;31(2):128–137.e5. doi: 10.1016/j.str.2022.12.006

Table 2.

Structural quality parameters

Structural RMSDs (fitting to mean) Ensemble average (±SD) Representative structure
Structural RMSDs (fitting to mean)

Backbone (Å) 0.57 (±0.11) 0.43
Heavy atoms (Å) 0.99 (±0.09) 0.92

RMSDs from experimental restraints

NOE distances (Å) 0.02897 (±0.00091) 0.02773
H-bond distances (Å) 0.0142 (±0.0029) 0.0129
Dihedral angles (°) 0.977 (±0.087) 1.012
RDCs, tight (Hz) 0.894 (±0.066) 0.881
RDCs, loose (Hz) 2.92 (±0.19) 2.63

Violation counts

NOE distances >0.5 Å 0.10 (±0.30) 0
NOE distances >0.3 Å 10.9 (±2.3) 7
NOE distances >0.1 Å 103.5 (±4.4) 104
H-bond distances >0.5 Å 0 (±0) 0
H-bond distances >0.5 Å 0 (±0) 0
H-bond distances >0.5 Å 0.6 (±0.5) 1
Dihedral angles >10° 0 (±0) 0
Dihedral angles >5° 2.00 (±0.63) 2

RMSDs from idealized geometry

Bond lengths (Å) 0.004177 (±0.000084) 0.004083
Bond angles (°) 0.567 (±0.013) 0.558
Improper angles (°) 1.726 (±0.056) 1.760

Ramachandran plot summary (PROCHECK) (%)

Most favored 84.5 71.3
Additionally allowed 13.9 24
Generously allowed 1.1 1.3
Disallowed 0.5 3.3

The first column lists average values for the ensemble (with standard deviations in parentheses), while the second column lists the corresponding values for the representative structure (closest-to-the-mean). Structural RMSDs were calculated over residues 12–126.