Table 2.
Candidate genes involved in skin color between red and brown individuals
| Gene_ID | FPKM (red) |
FPKM (brown) |
FDR | Fold change (log2) |
Annotation | Gene symbol |
|---|---|---|---|---|---|---|
| Up-regulated candidate DEGs associated with skin color in red fish | ||||||
|
maker_0147_ augustus-0.133 |
337.99 | 30.72 | 1.15E-15 | 4.06 | eph receptor A2 | epha2 |
|
maker_0315_ augustus-0.115 |
166.45 | 15.29 | 4.60E-10 | 4.12 | solute carrier family 7 member 5 | slc7a5 |
|
maker_0681_ snap-0.96 |
296.75 | 60.74 | 3.20E-07 | 2.94 | acyl-CoA synthetase long chain family member 4 | acsl4 |
|
maker_0101_ snap-0.156 |
2608.51 | 196.59 | 9.38E-12 | 4.31 | nucleolar protein 6 | nol6 |
|
augustus_0141_ processed-1.34 |
303.58 | 31.55 | 9.05E-12 | 3.88 | homeodomain interacting protein kinase 1 | hipk1 |
|
maker_0248_ augustus-0.220 |
3725.68 | 281.98 | 5.67E-10 | 4.37 | TIMP metallopeptidase inhibitor 2 | timp2 |
|
maker_0156_ augustus-2.210 |
521.19 | 41.71 | 5.80E-13 | 4.27 | semaphorin 6D | sema6d |
| Up-regulated candidate DEGs associated with skin color in brown fish | ||||||
|
maker_0129_ snap-3.241 |
11.56 | 118.54 | 1.85E-08 | -2.76 | solute carrier family 25 member 42 | slc25a42 |
|
augustus_0124_ processed-0.83 |
4.94 | 55.99 | 6.88E-07 | -2.92 | keratinocyte differentiation factor 1 | kdf1 |