TABLE 1.
Housekeeping loci under studya
Locus | Putative function of gene product | Size of sequenced fragment (bp) | No. of alleles identified | No. of polymorphic nucleotide sites | No. of polymorphic amino acid sites | % Nucleotide divergence between pairs of alleles
|
Chromosomal location (no. of kb from ori)b | GenBank no. | |
---|---|---|---|---|---|---|---|---|---|
Maximum | Average | ||||||||
gki | Glucose kinase | 498 | 34 | 36 | 12 | 2.6 | 1.3 | 1259 | AJ302470–AJ302503 |
gtr | Glutamine transport ATP-binding protein | 450 | 32 | 30 | 9 | 2.6 | 1 | 1237 | AJ302504–AJ302535 |
murl | Glutamate racemase | 438 | 24 | 21 | 6 | 1.4 | 0.8 | 313 | AJ406970–AJ406993 |
mutS | DNA mismatch repair (HexA) | 405 | 21 | 23 | 9 | 2.2 | 0.9 | 1788 | AJ406994–AJ407014 |
recP | Transketolase | 459 | 35 | 59 | 11 | 6.1 | 1.9 | 1392 | AJ407015–AJ407049 |
xpt | Xanthine phosphoribosyltransferase | 450 | 29 | 31 | 10 | 2.9 | 0.8 | 931 | AJ291638–AJ291666 |
yqiL | Acetoacetyl-CoA thiolase (AtoB) | 434 | 22 | 22 | 12 | 1.4 | 0.7 | 129 | AJ291616–AJ291637 |
Alleles of the seven housekeeping loci can be obtained (http://www.mlst.net).
The emm gene is located at kb 1685, relative to the origin, based on the genome of GAS strain 700294 (www.genome.ou.edu; 10 February 2001). The size of the strain 700294 genome is 1,852 kb.