Table 5.
Overview of the input sequences used for protein structure prediction with ColabFold.
| Description | Uniprot Identifier | Sequence Range |
|---|---|---|
| nsp3 lumenal region | P0DTD1 | 2247–2317 |
| nsp4 lumenal region | P0DTD1 | 2797–3044 |
| nsp3 and nsp4 lumenal regions | P0DTD1 | 2247–2317; 2797–3044 |
| nsp3 lumenal region with adjoining transmembrane regions | P0DTD1 | 2226–2338 |
| nsp4 lumenal region with adjoining transmembrane regions | P0DTD1 | 2776–3065 |
| nsp3, nsp4 and nsp6 lumenal regions | P0DTD1 | 2247–2317; 2797–3044; 3656–3673 |
| nsp3 lumenal region with adjoining transmembrane regions and nsp4 lumenal region with adjoining transmembrane regions | P0DTD1 | 2226–2338; 2776–3065 |
| nsp3 lumenal region with adjoining transmembrane regions and nsp4 lumenal region | P0DTD1 | 2226–2338; 2797–3044 |
| nsp4 lumenal region with adjoining transmembrane regions and nsp3 lumenal region | P0DTD1 | 2776–3065; 2247–2317 |