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. 2023 Jan 7;16:1. doi: 10.1186/s13072-022-00477-0

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© The Author(s) 2023

Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

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Fig. 3 — Suggested pipeline for processing and analysis of X and Y chromosome DNAme array data. Overview of all stages of processing from raw data through to processed β or M values. Colors are used to indicate where updated methods should be used for best results (dark red), which steps need to be stratified by sex (light red), and where new processing/analysis steps are proposed to enable informative sex chromosome investigations (yellow)