Table 1.
Comparison of HiChIPdb to other 3D genome databases, including 4DN, 3D genome browser (3DGB), HUGIN2 and 3DIV. Most 3D genome databases mainly focus on Hi-C data while only HiChIPdb and HUGIN2 incorporate HiChIP data
Function type | Data type/specific function | HiChIPdb | 4DN | 3DGB | HUGIN2 | 3DIV |
---|---|---|---|---|---|---|
Data coverage | Contain HiChIP data | √ | √ | |||
Data browser | Simple information browser | √ | √ | √ | √ | √ |
Hierarchical data organization | √ | |||||
Table browser | √ | √ | √ | √ | ||
Visualization | Interactive data entry | √ | √ | |||
Interactive statistics | √ | |||||
Loop visualization | √ | √ | ||||
Data search | By genomic region | √ | √ | √ | √ | |
By gene | √ | √ | √ | √ | ||
By SNP | √ | √ | √ | √ | ||
Annotation | Nearby gene | √ | √ | √ | √ | |
GWAS Catalog SNPs | √ | √ | √ | |||
Loop anchor information | √ | |||||
Download | By sample | √ | √ | √ | ||
By tissue | √ | |||||
By organ | √ | |||||
By chromosome | √ | |||||
File hash check | √ |