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. 2022 Oct 10;51(D1):D159–D166. doi: 10.1093/nar/gkac859

Table 1.

Comparison of HiChIPdb to other 3D genome databases, including 4DN, 3D genome browser (3DGB), HUGIN2 and 3DIV. Most 3D genome databases mainly focus on Hi-C data while only HiChIPdb and HUGIN2 incorporate HiChIP data

Function type Data type/specific function HiChIPdb 4DN 3DGB HUGIN2 3DIV
Data coverage Contain HiChIP data
Data browser Simple information browser
Hierarchical data organization
Table browser
Visualization Interactive data entry
Interactive statistics
Loop visualization
Data search By genomic region
By gene
By SNP
Annotation Nearby gene
GWAS Catalog SNPs
Loop anchor information
Download By sample
By tissue
By organ
By chromosome
File hash check